PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00063.98 | ||||||||
Common Name | AMTR_s00063p00216020, LOC18444621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Trihelix | ||||||||
Protein Properties | Length: 225aa MW: 25212.8 Da PI: 10.7349 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.6 | 2.1e-15 | 26 | 109 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspk...qCkekwenlnkrykkike 66 +W++ + +L+ a+++++ + +r+klk ++W++v++++++rg +r pk qCk+k+e++++ry+ + evm_27.model.AmTr_v1.0_scaffold00063.98 26 EWSDGAISTLLGAYQSKWVQRNRAKLKSQDWADVARHVSSRGAsSRAPKtltQCKNKIESMKRRYRSESS 95 5*************************************777764665543339*************9876 PP trihelix 67 gekkrtsessstcpyfdqle 86 + +st+p+f++l+ evm_27.model.AmTr_v1.0_scaffold00063.98 96 SGA------VSTWPLFHRLD 109 655......579*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-19 | 24 | 109 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASIAPQSEP NGRTRPEPTA RPRRDEWSDG AISTLLGAYQ SKWVQRNRAK LKSQDWADVA 60 RHVSSRGASS RAPKTLTQCK NKIESMKRRY RSESSSGAVS TWPLFHRLDL LLRCSKAEAN 120 GEEGKIPASQ EIPAKIPAKY ELMSEKKRKG AASWVMEALM SLEERERKAM REIERVRAEL 180 EAKRVEMEKK ETAIMASTQL EIEKLISDGR KNGRKSTGKG MAAN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854849.1 | 1e-161 | trihelix transcription factor ASIL2 | ||||
TrEMBL | U5CST7 | 1e-160 | U5CST7_AMBTC; Uncharacterized protein | ||||
STRING | ERN16316 | 1e-161 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4409 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-52 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00063.98 |
Entrez Gene | 18444621 |
Publications ? help Back to Top | |||
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