PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00059.249 | ||||||||
Common Name | AMTR_s00059p00213350, LOC18446049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Dof | ||||||||
Protein Properties | Length: 202aa MW: 22036.7 Da PI: 8.0652 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 5.9e-39 | 22 | 82 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+P+Gg++rk k+s evm_27.model.AmTr_v1.0_scaffold00059.249 22 PHEHLRCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPIGGATRKTTKRS 82 67899***************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-23 | 17 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.4E-33 | 24 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.984 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDIHHQHQQQ NQVTKPQPLD QPHEHLRCPR CDSTNTKFCY YNNYNLSQPR HFCKNCRRYW 60 TKGGALRNIP IGGATRKTTK RSSSKPKPPS KSVILPEMTP SMPEISATTA ADMFETSGEI 120 TGTFSSLLAA NGGFGGLGEP WWNGGFQRVG GFEEGGLMQG SFVRGGIGSL QEWLGGGICE 180 PWMVETEGLD ANCWSAGSGL Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006856237.1 | 1e-150 | dof zinc finger protein DOF1.7 | ||||
Swissprot | O82155 | 3e-39 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | U5D5I8 | 1e-148 | U5D5I8_AMBTC; Uncharacterized protein | ||||
STRING | ERN17704 | 1e-149 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 9e-34 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00059.249 |
Entrez Gene | 18446049 |
Publications ? help Back to Top | |||
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