PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00059.116
Common NameAMTR_s00059p00136790
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BES1
Protein Properties Length: 144aa    MW: 15723.9 Da    PI: 9.5109
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00059.116genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822161.74.6e-501688274
                                    DUF822  2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkg 72
                                               +gr ptwkErEnnkrRERrRRaiaakiyaGLRa Gnyklpk++DnneVlkALcreAGw+ve+DGttyrk 
  evm_27.model.AmTr_v1.0_scaffold00059.116 16 VGGRLPTWKERENNKRRERRRRAIAAKIYAGLRASGNYKLPKHCDNNEVLKALCREAGWTVEEDGTTYRKL 86
                                              689******************************************************************86 PP

                                    DUF822 73 sk 74
                                               +
  evm_27.model.AmTr_v1.0_scaffold00059.116 87 NS 88
                                              55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.2E-461787IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTSGGGGGGG GGGGGVGGRL PTWKERENNK RRERRRRAIA AKIYAGLRAS GNYKLPKHCD  60
NNEVLKALCR EAGWTVEEDG TTYRKLNSNF YPLCFWSGSG VSAEAIESQL VLTVLLFYFD  120
LASGFIPSSV IFELTVIFFF FFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-231985372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-231985372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-231985372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-231985372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856105.28e-56BES1/BZR1 homolog protein 1
SwissprotQ6EUF18e-28BZR4_ORYSJ; Protein BZR1 homolog 4
TrEMBLU5CW901e-100U5CW90_AMBTC; Uncharacterized protein
STRINGERN175711e-100(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36780.18e-24BES1/BZR1 homolog 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]