PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00059.107 | ||||||||
Common Name | AMTR_s00059p00130960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 27684.3 Da PI: 9.9711 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.6e-15 | 128 | 214 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 f+k +++s+v +l lp f++++ +k ++ +tlede+ ++++ ++ +k++ l++GW++F+ evm_27.model.AmTr_v1.0_scaffold00059.107 128 FVKPMLHSHVKVGFWLGLPVGFCKSNL-PK-NDAIITLEDEDCNEFQTNFLAQKTG----LSAGWRGFA 190 89*********************9993.32.4568***************444444....********* PP HHHT--TT-EEEEEE-SSSEE..E CS B3 70 kangLkegDfvvFkldgrsefelv 93 +++L++gD vvF+l++ +f+ + evm_27.model.AmTr_v1.0_scaffold00059.107 191 IDHELNDGDAVVFQLVKPLKFKVM 214 **************9986666444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.9E-18 | 122 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 123 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.46E-22 | 126 | 215 | No hit | No description |
PROSITE profile | PS50863 | 10.997 | 128 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.0E-17 | 128 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 128 | 215 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAVEPAYEE FRKQRLEENR RRMQELNLAA LSQTLKKSCP KPSPSKYCKP KTPRIDMGLV 60 EVRRSSRVAA MPAASYKEVK YEYMEMPRRI YKRRALLDRS HISDGARTKA IERAEVLQSN 120 LEPIYPSFVK PMLHSHVKVG FWLGLPVGFC KSNLPKNDAI ITLEDEDCNE FQTNFLAQKT 180 GLSAGWRGFA IDHELNDGDA VVFQLVKPLK FKVMIWLSAS VIALVDLFKA LHSSQPKVIV 240 VAY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627763.1 | 1e-160 | B3 domain-containing protein At3g19184 | ||||
Refseq | XP_020530177.1 | 1e-160 | B3 domain-containing protein At3g19184 | ||||
Refseq | XP_020530178.1 | 1e-160 | B3 domain-containing protein At3g19184 | ||||
Swissprot | Q1G3M3 | 3e-65 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | U5D833 | 0.0 | U5D833_AMBTC; Uncharacterized protein | ||||
STRING | ERN17562 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-62 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00059.107 |
Publications ? help Back to Top | |||
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