PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00058.111
Common NameAMTR_s00058p00144820
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 158aa    MW: 18151.7 Da    PI: 7.3726
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00058.111genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.7e-1446154296
                                               EEE-..-HHHHT.T-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEE CS
                                        B3   2 fkvltpsdvlks.grlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkk 55 
                                               +k+lt+ d  ++ + l+lpk+f+e+h              ++ k ++  ++ +de gr+W++ ++++ +
  evm_27.model.AmTr_v1.0_scaffold00058.111  46 EKTLTNTDRDRHqNKLSLPKDFMEKHvipfltdderkritEKGKGGGLPVVAYDEAGRTWDLVFKFWDS 114
                                               689999999988789*****************99999988555678889******************** PP

                                               TTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE..EEEE CS
                                        B3  56 sgryvltkGWkeFvkangLk.egDfvvFkldgrsefelvvkv 96 
                                               s+ yvl k Wk+  +an+ k     ++F++ ++  +el++ +
  evm_27.model.AmTr_v1.0_scaffold00058.111 115 SENYVLIKEWKNIMEANNWKhNLSLCTFRFGWN--GELCFAF 154
                                               ********************66799****9885..4446555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037542.1E-1238129IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.104.5E-1840155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-1744152IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-845156IPR003340B3 DNA binding domain
PROSITE profilePS508639.67146157IPR003340B3 DNA binding domain
CDDcd100172.24E-1247156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGEITCTLDN SNLMLLAECA CDASKDGGYF NTLKRLGARK MSHVCEKTLT NTDRDRHQNK  60
LSLPKDFMEK HVIPFLTDDE RKRITEKGKG GGLPVVAYDE AGRTWDLVFK FWDSSENYVL  120
IKEWKNIMEA NNWKHNLSLC TFRFGWNGEL CFAFRSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW1PFV51e-114W1PFV5_AMBTC; Uncharacterized protein
STRINGERN065841e-114(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-10RAV family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]