PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00057.67 | ||||||||
Common Name | AMTR_s00057p00091350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Nin-like | ||||||||
Protein Properties | Length: 128aa MW: 14589.3 Da PI: 11.1406 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 68.9 | 7.1e-22 | 1 | 37 | 16 | 52 |
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +pi++AAk L+v+lTvLK++CR++GI+RWPhRk+ksl evm_27.model.AmTr_v1.0_scaffold00057.67 1 MPITQAAKVLKVGLTVLKKKCREFGIPRWPHRKMKSL 37 79*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.733 | 1 | 58 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.1E-17 | 1 | 37 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:1.10.10.10 | 5.4E-4 | 53 | 90 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MPITQAAKVL KVGLTVLKKK CREFGIPRWP HRKMKSLQSL VQNVQELGKE DGEMGEEKIR 60 NAIKILEEQR NLMEKMPGMQ LAEKTKKLRQ ACFKANYKRR RHLNSSALSS SSSNPIFSIK 120 LARNINL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855335.2 | 5e-88 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 1e-39 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | U5D5U2 | 2e-87 | U5D5U2_AMBTC; Uncharacterized protein | ||||
STRING | ERN16802 | 4e-88 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-33 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.67 |
Publications ? help Back to Top | |||
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