PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00056.197
Common NameAMTR_s00056p00207550, LOC18443532
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 447aa    MW: 48921.2 Da    PI: 7.6699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00056.197genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-09176196526
                                               --SGGGGTS--TTTTT-SS-SS CS
                                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                                C++f++ G Ck+Gd+C FaHg
  evm_27.model.AmTr_v1.0_scaffold00056.197 176 ACPDFRK-GNCKRGDSCEFAHG 196
                                               7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-6171197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277172198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6176198IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7176196IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643206230IPR000571Zinc finger, CCCH-type
SMARTSM0035614206229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGEENGTSLM EATPPWSLFS EREPNCPTRI YSLPLSGISS NHQNLIPQDS LSPVYKPGFS  60
SPFVDFDPGY AGSRPEKDQS GQEGYGFGGN RPENDFSSSF SDAMAALQRY LPSNYEDQEP  120
NAAIDAYSCD EFRMYDFKVR RCVRGRSHDW TECPYAHPGE KARRRDPRKF HYSGTACPDF  180
RKGNCKRGDS CEFAHGVFEC WLHPARYRTQ PCKDGTSCRR RVCFFAHTPE QLRVLPQNPS  240
PRYSGAVSGG FPGVSRFSGE SYDGSPMRLF AKASSLSNSL SSPLSNSLSP TSTLASHVHS  300
PPALSPPLSP SVSPPLSPAN FSPENQIFRR RIPVSDVVSS LKNLQLGGSP NSGAFMAVSG  360
NQGRFSGGFS SSFRPAFSSL PSTPTKVGWT DSFGNGVADE EEPVERVESG RDLRAQLFAK  420
LSRQNSMAER TEAQAPDLGW VSELVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853780.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G22e-98C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLU5D1G80.0U5D1G8_AMBTC; Uncharacterized protein
STRINGERN152470.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-80C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]