PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00055.166 | ||||||||
Common Name | AMTR_s00055p00218640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | E2F/DP | ||||||||
Protein Properties | Length: 431aa MW: 49551.3 Da PI: 6.516 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 76.1 | 3.5e-24 | 17 | 82 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+ +fl l+++ +++ ++l+e+a++L v +rRRiYDi+NVLe+++++++k+kn+++w+g evm_27.model.AmTr_v1.0_scaffold00055.166 17 RKQKSLGLLCVNFLGLYNRDDTESIELDEAATRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYKWIG 82 79********************************...**..****************************98 PP | |||||||
2 | E2F_TDP | 37.4 | 4.1e-12 | 143 | 178 | 41 | 71 |
E2F_TDP 41 nkrRRiYDilNVLealnliek.....kekneirwkg 71 k RR+YDi+NVL+++nliek ++k+++rw g evm_27.model.AmTr_v1.0_scaffold00055.166 143 AKMRRLYDIANVLSSMNLIEKthqpeNRKPAFRWLG 178 588******************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-26 | 13 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.74E-17 | 16 | 81 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.2E-29 | 17 | 82 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.9E-21 | 18 | 82 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SMART | SM01372 | 2.4E-6 | 88 | 178 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.6E-13 | 135 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.5E-10 | 139 | 178 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.22E-8 | 142 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MTTSSSSFAQ RDHTYSRKQK SLGLLCVNFL GLYNRDDTES IELDEAATRL GVERRRIYDI 60 VNVLESVGVL ARKAKNQYKW IGMGGIPGAL ECLREDALKG NPDSNYAISS DDVKDFDDDE 120 DEESLSQKKS DPSETATSKP KQAKMRRLYD IANVLSSMNL IEKTHQPENR KPAFRWLGLK 180 GGTENKVESS CFNLSEREIK KREFGSDITN IDFKKNRIET FVQQPINALH ETGVCVPRKD 240 LNWKPQKEVP HAQHSYDHPH LQQSKQEQKQ QFRLQQHQQP LQQQEGKQQQ LQSGHQQKEQ 300 QQDQEQQQNT KGVVFGPFAP ACLPRENQND VKKTQDWMKL ATSYRPQYHN QGLSNVFGHY 360 LEAWKSWYEQ YMLHGNNGDF EDGVIEIPMV FASHLELEPL VACAREFEDN AAQDGIAQTL 420 RMMELHKRVE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 1e-15 | 16 | 94 | 3 | 85 | Transcription factor E2F8 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020530688.1 | 0.0 | E2F transcription factor-like E2FE isoform X1 | ||||
TrEMBL | U5CYF5 | 0.0 | U5CYF5_AMBTC; Uncharacterized protein | ||||
STRING | ERN18376 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2474 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01330.1 | 5e-49 | DP-E2F-like protein 3 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00055.166 |
Publications ? help Back to Top | |||
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