PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00054.9 | ||||||||
Common Name | AMTR_s00054p00036880, LOC18446474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 29304.8 Da PI: 5.6738 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.8 | 1.4e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ++++P +rikki++aded+ +i+ +Pvl+ska elf+ +l r++ + ++ +t++ ++ +v+r ++fd evm_27.model.AmTr_v1.0_scaffold00054.9 6 DTRFPASRIKKIMQADEDIGKIALAVPVLVSKALELFLQDLCGRTYEITLQKGAKTMNSLHLKHCVQRYNVFD 78 5789********************************************************************* PP NF-YC 91 flvdivpr 98 fl div + evm_27.model.AmTr_v1.0_scaffold00054.9 79 FLRDIVQK 86 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-24 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-19 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MRKKLDTRFP ASRIKKIMQA DEDIGKIALA VPVLVSKALE LFLQDLCGRT YEITLQKGAK 60 TMNSLHLKHC VQRYNVFDFL RDIVQKVPDL GGSEGIGDDR SILRRRKNLE EDVETDEVKR 120 AKAGIHLMSR RGRGRGGRGR GRGRGRGRVS GRDRIDIENC EDDVTVSTEH DKPCGEGVIL 180 EDETERKENI ASNTTSPTGI NFDLNMHVNE HTTGKQITQD DNHVEYPGWS LPEIGIDTSQ 240 LVHFDKTFEE DEDYDNEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 146 | RGRGRGRGRG |
2 | 137 | 147 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006856654.1 | 0.0 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | U5CXS2 | 0.0 | U5CXS2_AMBTC; Uncharacterized protein | ||||
STRING | ERN18121 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-60 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00054.9 |
Entrez Gene | 18446474 |
Publications ? help Back to Top | |||
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