PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00049.33
Common NameAMTR_s00049p00058940, LOC18441847
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 561aa    MW: 61053.3 Da    PI: 6.4606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00049.33genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-1131925571374
                                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 
                                              lv+lL++cAeav+ +d+++a++lL +l+  asp g p+qR+aa+f+ +L+arla     l++a  p    
  evm_27.model.AmTr_v1.0_scaffold00049.33 192 LVQLLMACAEAVACRDQKQARTLLFELHAEASPFGAPFQRVAACFAAGLSARLAT----LASAPGPLMLG 257
                                              689***************************************************9....66666666666 PP

                                     GRAS  71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRp 136
                                              + +++e+  al+l +e++P++kf+h++aN a+lea+ege+ vH++D++++ +l    QW +Ll+aLa+Rp
  evm_27.model.AmTr_v1.0_scaffold00049.33 258 QPSMEERSEALRLAYEACPFIKFGHFVANAAVLEAFEGENSVHVVDLGMTACLphapQWRSLLRALAARP 327
                                              66799*********************************************9877777************* PP

                                     GRAS 137 egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
                                              +g p  +R+T+vg+    ++  l+++g  L  fA++lg++++f + v+++le+l++e+L+ +pgEalaV+
  evm_27.model.AmTr_v1.0_scaffold00049.33 328 GGLPrCMRLTAVGP----RAAPLNAIGAELCAFAQSLGIDLQFAA-VETTLESLKPEDLAPEPGEALAVC 392
                                              997768********....99*************************.799********************* PP

                                     GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                                              +vl+lhr ++es    +   + L+ v +l P+v++vveq++ hn++ Fl rf+eal+yys++fd+l+a+l
  evm_27.model.AmTr_v1.0_scaffold00049.33 393 CVLELHRAVKESRGALH---SALRGVHRLAPRVLTVVEQDSGHNGPFFLGRFTEALHYYSSIFDALDASL 459
                                              *********88776666...8************************************************* PP

                                     GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                                              pr +  r+ vE++ +g+ei+n+vacega+r+erhe++ +Wr+r+++aGF+++p++   + qa++ l+ + 
  evm_27.model.AmTr_v1.0_scaffold00049.33 460 PRGDTGRMRVEQHHFGEEIKNIVACEGADRVERHERADQWRRRMSRAGFQSAPIR--LVGQARRWLADTW 527
                                              *****************************************************95..7999999999998 PP

                                     GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                               ++gy+v +e+g+lvlgWk+rp+v++S+W+
  evm_27.model.AmTr_v1.0_scaffold00049.33 528 tGEGYTVVDEKGCLVLGWKSRPIVVASCWK 557
                                              8****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.54166538IPR005202Transcription factor GRAS
PfamPF035145.7E-111192557IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAPSLCFQPC DRVEHLSVPN LILLGLTWPF HPFPHTPLSG HEDKQGPLSG LEFQFSGKKE  60
DPFSGLENPF ALGKESLVPG NKENQFAGDE SKLSITFPGD ESPFTSKGGQ FFGDESQENR  120
LNKRLFSDAE SPFSGKGNWF SGRKRPRADQ LGFRDHVLTY KEQFAEAESL LIQDSSGGAP  180
EAEDTGGGGV RLVQLLMACA EAVACRDQKQ ARTLLFELHA EASPFGAPFQ RVAACFAAGL  240
SARLATLASA PGPLMLGQPS MEERSEALRL AYEACPFIKF GHFVANAAVL EAFEGENSVH  300
VVDLGMTACL PHAPQWRSLL RALAARPGGL PRCMRLTAVG PRAAPLNAIG AELCAFAQSL  360
GIDLQFAAVE TTLESLKPED LAPEPGEALA VCCVLELHRA VKESRGALHS ALRGVHRLAP  420
RVLTVVEQDS GHNGPFFLGR FTEALHYYSS IFDALDASLP RGDTGRMRVE QHHFGEEIKN  480
IVACEGADRV ERHERADQWR RRMSRAGFQS APIRLVGQAR RWLADTWTGE GYTVVDEKGC  540
LVLGWKSRPI VVASCWKCAQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6519955625377Protein SCARECROW
5b3h_D1e-6519955625377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147GRKRPRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852136.10.0DELLA protein RGL1
TrEMBLW1PZ110.0W1PZ11_AMBTC; Uncharacterized protein
STRINGERN136030.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-74RGA-like 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]