PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00048.42 | ||||||||
Common Name | AMTR_s00048p00089530, LOC18443813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 789aa MW: 87787.8 Da PI: 6.4363 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1.1e-19 | 88 | 143 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ ++++ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k evm_27.model.AmTr_v1.0_scaffold00048.42 88 RKRYHRHSVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 143 7888999**********************************************998 PP | |||||||
2 | START | 159.3 | 2.9e-50 | 296 | 520 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHH CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlal 60 la +a++el+k+ +++e +W +s e++n de+ ++f+ + ++e r ++ v+m++ + evm_27.model.AmTr_v1.0_scaffold00048.42 296 LAMAAMAELLKMSQLNEGLWLQSGgegrEILNVDEYAKSFQWPINhkqelsgWRTEGTRSTVTVIMNSIT 365 57799***********************************665558899999999*************** PP HHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.T CS START 61 lveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlg 119 lv +ld + +W e+++ ka t++vi+ g g lqlm+ae+q+ +plvp R+++f+Ry++q evm_27.model.AmTr_v1.0_scaffold00048.42 366 LVDAFLDAN-KWMEMFPsivsKARTVQVITAGlashgsGSLQLMYAEFQFFTPLVPtREVYFLRYCQQTA 434 *********.************************************************************ PP TS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS START 120 agdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189 +g+wvivd vd +++ + ++ R +++pSg++i++++ng+s+vtwveh +++++ +h +++++v+sg evm_27.model.AmTr_v1.0_scaffold00048.42 435 DGGWVIVDFPVDGISENL-QLPLSRYRRRPSGCVIKDMPNGYSRVTWVEHSEVDDKPIHPMFNQIVESGE 503 ****************98.9************************************************** PP HHHHHHHHHHTXXXXXX CS START 190 aegaktwvatlqrqcek 206 a+ga++w lqrqce+ evm_27.model.AmTr_v1.0_scaffold00048.42 504 AFGAQRWATVLQRQCER 520 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 73 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-19 | 76 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-19 | 86 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.28E-18 | 87 | 146 | No hit | No description |
Pfam | PF00046 | 3.6E-17 | 88 | 143 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.843 | 286 | 523 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.42E-33 | 289 | 522 | No hit | No description |
CDD | cd08875 | 2.87E-111 | 290 | 519 | No hit | No description |
SMART | SM00234 | 1.3E-30 | 295 | 520 | IPR002913 | START domain |
Pfam | PF01852 | 2.8E-41 | 296 | 520 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.1E-6 | 372 | 489 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.57E-17 | 550 | 779 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 789 aa Download sequence Send to blast |
MYGDCQVMMS MGGNIVGEPM FPPSNLNFLH NLPYNSPPVF SSLLTKEDNG ALKGKEDELD 60 SKSGSGNIDG GVSEEHEDGE QQQRNPKRKR YHRHSVRQIQ EMEALFKECP HPDDKQRLKL 120 SQDLGLKPRQ VKFWFQNRRT QMKSQQDRAD NVILRAENEN LKNENVRLHG AIRNITCPAC 180 GGPAILGEMS LDEQHLRIEN ARLKEELERL NGMATRYAGG RPVHGMVQAP QMMVPSLDLD 240 IGMYTRQYHH EQAPPPPFCP PLCHTSDMMV PHSMPEINPL GTVGLLENDK PLAFDLAMAA 300 MAELLKMSQL NEGLWLQSGG EGREILNVDE YAKSFQWPIN HKQELSGWRT EGTRSTVTVI 360 MNSITLVDAF LDANKWMEMF PSIVSKARTV QVITAGLASH GSGSLQLMYA EFQFFTPLVP 420 TREVYFLRYC QQTADGGWVI VDFPVDGISE NLQLPLSRYR RRPSGCVIKD MPNGYSRVTW 480 VEHSEVDDKP IHPMFNQIVE SGEAFGAQRW ATVLQRQCER LASLMAENIS DRDLGVMTTL 540 EARRSLMRLA QRMMRIFCIN MSGSGGQSWT TLTGGPEDTV RITTRKNTEV GQPIGLILCA 600 ITTTWLPVPP HQVFDLLRDD RRRTELDVLS SGSASNEVAH IANGTHTGNC ISLYRVNTGG 660 NTPQNVELML QESCTDPSAS LVIYAPIDIS SVQMAVTSED HSYVPLLPSG FIITPRRQPN 720 DPKHAYNGNG ISSSNNRGDG CLMTVGVQML ASSNPTANLN FSAVPAINNH LCNAVNQIRA 780 ALLAPRDQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854056.1 | 0.0 | homeobox-leucine zipper protein ROC3 isoform X2 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | U5D5B9 | 0.0 | U5D5B9_AMBTC; Uncharacterized protein | ||||
STRING | ERN15523 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9475 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00048.42 |
Entrez Gene | 18443813 |
Publications ? help Back to Top | |||
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