PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00046.134 | ||||||||
Common Name | AMTR_s00046p00208680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25615.1 Da PI: 10.0621 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.7e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v ++ifsstgklye+ss evm_27.model.AmTr_v1.0_scaffold00046.134 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGLVIFSSTGKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 87.6 | 2.5e-29 | 77 | 171 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 ++ s ++++ +q+e+a L++++++Lq ++R+l+Ge+L+ L + eLq+Le+qLe sl+ +R kK+++l evm_27.model.AmTr_v1.0_scaffold00046.134 77 HQDSSSSSEVTLWQREAATLRQQLKSLQDNHRQLMGEELSGLGVGELQNLENQLEMSLRGVRRKKDQIL 145 344478889999********************************************************* PP K-box 74 leqieelqkkekelqeenkaLrkkle 99 +eqi+elq+k + +++en++L +k+ evm_27.model.AmTr_v1.0_scaffold00046.134 146 TEQIQELQRKGDLIHQENMELYRKVY 171 **********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.665 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.46E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.7E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-27 | 82 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.392 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADVGLVIFSS TGKLYEFSSS 60 SMKSIIERYN KCKDERHQDS SSSSEVTLWQ REAATLRQQL KSLQDNHRQL MGEELSGLGV 120 GELQNLENQL EMSLRGVRRK KDQILTEQIQ ELQRKGDLIH QENMELYRKV YEARISNEGT 180 KTKSFSLTNF NFGDDPHMPI HLQLSQPQPQ QYESPARSMK LR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-20 | 1 | 86 | 1 | 85 | MEF2C |
5f28_B | 5e-20 | 1 | 86 | 1 | 85 | MEF2C |
5f28_C | 5e-20 | 1 | 86 | 1 | 85 | MEF2C |
5f28_D | 5e-20 | 1 | 86 | 1 | 85 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 2e-34 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 2e-34 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020530549.1 | 1e-163 | MADS-box transcription factor 23 isoform X4 | ||||
Swissprot | Q9SZJ6 | 5e-92 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | U5DCD9 | 1e-162 | U5DCD9_AMBTC; Uncharacterized protein | ||||
STRING | ERN18058 | 1e-163 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-84 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00046.134 |
Publications ? help Back to Top | |||
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