PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00045.198

Common Name

AMTR_s00045p00168140

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

GRAS

Protein Properties

Length: 288aa MW: 32234.5 Da PI: 5.1144

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.198	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	102.8	4.8e-32	79	272	11	203
GRAS 11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseel 78 +s+++ a++lL +sp g+p+qRl+++f eAL +r+ ++ k+l+p+ + + ++ l evm_27.model.AmTr_v1.0_scaffold00045.198 79 EISNQQYDSAKRLLVVRDFESSPVGNPVQRLVFHFSEALWERVET--ETGLKSLTPEYFEGEAaADKML 145 67888888999999998999**********************9..5555666666665554222222 PP GRAS 79 aalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppsl 142 ++ +++ P k+ ++ta q I a+++++++ iD+++ Gl+W +q+L++R+ + l evm_27.model.AmTr_v1.0_scaffold00045.198 146 EGYHPavlaIYKTVPSAKLLQFTASQVIISALASATKIYLIDLEARRGLHWNMVMQSLSERSeYPVEIL 214 2222234459*************************************************555569 PP GRAS 143 RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEala 203 ++T v++ s+e++eetg +L +fA++l++pf fn ++++++e+ eeL ++++gE +a evm_27.model.AmTr_v1.0_scaffold00045.198 215 KMTMVDD----STERVEETGTQLLNFAKTLKLPFVFNSITVSNVEQDMREELfELDRGELVA 272 *****....9*************************99999877666655999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.245	43	287	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-29	79	272	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MFTHHTLSLH ESEALCGLSP SPINTHFQAH SMIKRRFLPR HSGGCAVKQS TNIDTPIGGE 60 RELGGERELG GERKLSTEEI SNQQYDSAKR LLVVRDFESS PVGNPVQRLV FHFSEALWER 120 VETETGLKSL TPEYFEGEAA ADKMLEGYHP AVLAIYKTVP SAKLLQFTAS QVIISALASA 180 TKIYLIDLEA RRGLHWNMVM QSLSERSEYP VEILKMTMVD DSTERVEETG TQLLNFAKTL 240 KLPFVFNSIT VSNVEQDMRE ELFELDRGEL VASLLGEDDQ SHQKLVP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-13	77	246	27	192	Protein SCARECROW
5b3h_A	2e-13	77	246	26	191	Protein SCARECROW
5b3h_D	2e-13	77	246	26	191	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011621963.1	1e-103	scarecrow-like protein 23
TrEMBL	W1P398	0.0	W1P398_AMBTC; Uncharacterized protein
STRING	ERN02119	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2520	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	8e-16	GRAS family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00045.198

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]