PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00045.197 | ||||||||
Common Name | AMTR_s00045p00168010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GRAS | ||||||||
Protein Properties | Length: 226aa MW: 25884.1 Da PI: 6.369 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 177.3 | 1.1e-54 | 5 | 223 | 154 | 374 |
GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsle 221 s e++eetg rL +fA++l++pf f+ ++++++e eeL +++++E++aV + l+++l ++ +le evm_27.model.AmTr_v1.0_scaffold00045.197 5 SGERMEETGTRLLNFAKTLNLPFVFKSITVSNVELDMREELfELDREESVAVYAPMVLKTMLIKPRCLE 73 6799************************999999876666659*******************9999999 PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 + +++++++l P ++v++e e++hns+sF++rf+e l +ysa fdsl+a + + + +r +Er+++ evm_27.model.AmTr_v1.0_scaffold00045.197 74 K----TIRVIRNLCPYIMVLTEVESKHNSPSFVHRFIEVLFFYSAYFDSLDAFMEAVDPDRLAMERAFM 138 9....**************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 g +i+n+va eg+er+ rh +Wr ++++GF++v+l +a + ak +++ + s+ ++e + ++l evm_27.model.AmTr_v1.0_scaffold00045.197 139 GSAIRNMVAGEGEERIIRHVGIDTWRLFFNRVGFEEVELVRDASNLAKVMVKIYRhSESISLEMNGKAL 207 *******************************************************9999********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 + gWk++pL svSaWr evm_27.model.AmTr_v1.0_scaffold00045.197 208 TVGWKGKPLHSVSAWR 223 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.162 | 1 | 202 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-52 | 5 | 223 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVGDSGERME ETGTRLLNFA KTLNLPFVFK SITVSNVELD MREELFELDR EESVAVYAPM 60 VLKTMLIKPR CLEKTIRVIR NLCPYIMVLT EVESKHNSPS FVHRFIEVLF FYSAYFDSLD 120 AFMEAVDPDR LAMERAFMGS AIRNMVAGEG EERIIRHVGI DTWRLFFNRV GFEEVELVRD 180 ASNLAKVMVK IYRHSESISL EMNGKALTVG WKGKPLHSVS AWRCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-23 | 9 | 223 | 160 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848944.1 | 6e-92 | scarecrow-like protein 18 | ||||
Refseq | XP_011621964.1 | 5e-94 | DELLA protein GAIP-like | ||||
TrEMBL | W1P2H9 | 1e-164 | W1P2H9_AMBTC; Uncharacterized protein | ||||
STRING | ERN02118 | 1e-165 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2520 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 2e-38 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00045.197 |
Publications ? help Back to Top | |||
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