PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00044.3
Common NameAMTR_s00044p00016810
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 291aa    MW: 33288.4 Da    PI: 8.9342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.3genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-1733123286
                                trihelix   2 WtkqevlaLiearremeerlrrg......klkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                                             Wt +e+++Li+a+r ++er  +g      k ++ +W++v +++++  + rs++qC++kw+nl ++ykk+++
  evm_27.model.AmTr_v1.0_scaffold00044.3  33 WTLHETMVLIRAKRMDDERRMKGgdrernKTAELRWKWVENYCWQNDCLRSQNQCNDKWDNLLRDYKKVRD 103
                                             **************8888877543333337999************************************** PP

                                trihelix  67 gekkrtsessstcpyfdqle 86 
                                              e +r++e     p + q+e
  evm_27.model.AmTr_v1.0_scaffold00044.3 104 YEARRAEEPGGGAPSYWQIE 123
                                             ****9877666777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1082595IPR017877Myb-like domain
PfamPF138372.6E-1132110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGDPNTAVVV AQEQSGPSSS SPNAPREYRK GNWTLHETMV LIRAKRMDDE RRMKGGDRER  60
NKTAELRWKW VENYCWQNDC LRSQNQCNDK WDNLLRDYKK VRDYEARRAE EPGGGAPSYW  120
QIEKQERKEK NLPSNMVAEV FEALNEVVNK RCNPNVQRAL PPIQQQLPPP PPPPAPPPPP  180
PPSQPFSGDI YESSDSDHTE KTDSEAKRRK LKNLGPSVVR SASMLAQTML TCEEKREKRH  240
RDIIEIEEKK LQMEERRTEM NRQGFSGLVS SVNNLSNAIL ALVSNRNDGK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020529945.10.0trihelix transcription factor ASR3
TrEMBLU5D3P10.0U5D3P1_AMBTC; Uncharacterized protein
STRINGERN170340.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-51Trihelix family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]