PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00044.207
Common NameAMTR_s00044p00189590, LOC18445572
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 368aa    MW: 40798.3 Da    PI: 7.1349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.207genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161462148
                                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+W++eEd +l+  ++q+G+g +W + ++++g++R++k+c++rw++yl
  evm_27.model.AmTr_v1.0_scaffold00044.207 14 KGPWSPEEDAKLKAFIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                              79*********************************************97 PP
2Myb_DNA-binding37.94.1e-1269111246
                                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  evm_27.model.AmTr_v1.0_scaffold00044.207  69 GGFSEEEDDIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                               569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.463962IPR017930Myb domain
SuperFamilySSF466891.5E-2611109IPR009057Homeodomain-like
SMARTSM007175.2E-131364IPR001005SANT/Myb domain
PfamPF002492.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241569IPR009057Homeodomain-like
CDDcd001673.41E-101662No hitNo description
PROSITE profilePS5129421.61163117IPR017930Myb domain
SMARTSM007174.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2370117IPR009057Homeodomain-like
CDDcd001675.75E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAFIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDDIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
RKEQQQQARR LSAMAETNPQ AQRVTRESVS TFLSSSTNIS TPYSLSSLPG TDSLSTITKP  180
GSHMSINYIA QGDASFNDHA SIRKLLIKLG GKFSDDIYQS PTIDAPTPNL SAALDERENP  240
MSSFSSSTSI AHTCGTPDQL NYQPSVFSHY YADHATLNLS NSSLRYPIEM ATENLYSKTE  300
QQMDAWDYLY GSNIYMSGNN DSGSNGDDNN VRESNSTMWS DFGSCTSSYL FDEGYQGVLE  360
SKYQAST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855771.10.0transcription factor RAX1
TrEMBLU5DA200.0U5DA20_AMBTC; Uncharacterized protein
STRINGERN172380.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-77myb domain protein 84
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]