PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00040.87 | ||||||||
Common Name | AMTR_s00040p00118620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29634.1 Da PI: 4.8023 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.8 | 1.4e-42 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...kvka...eekewyfFskr 64 p G+rF Pt+eel+++yLk+k++g++ e++++i+ vdiy+++Pw+Lp+ + a + ++w+fF++ evm_27.model.AmTr_v1.0_scaffold00040.87 6 PIGYRFYPTEEELLSFYLKNKLDGNReAEIHRFIPLVDIYSYDPWQLPAmagE--AnigDGEQWFFFVQM 73 89**********************996777778***************53442..1334667******** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k++++g r+nr++ sgyWkatg+ v+s+++ ++gl+k+Lvfy+grap g+kt+W m+ey+l evm_27.model.AmTr_v1.0_scaffold00040.87 74 QKREKQGGRPNRIAPSGYWKATGTPGYVYSSNNGVIGLRKSLVFYTGRAPYGRKTKWKMNEYKL 137 **************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-46 | 4 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.891 | 5 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-21 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MQGGIPIGYR FYPTEEELLS FYLKNKLDGN REAEIHRFIP LVDIYSYDPW QLPAMAGEAN 60 IGDGEQWFFF VQMQKREKQG GRPNRIAPSG YWKATGTPGY VYSSNNGVIG LRKSLVFYTG 120 RAPYGRKTKW KMNEYKLRIV ETNGDDVASS SSSHGVTTFE VLREMSLCRI YVKSGVLRQF 180 DRRPPVIPGI QEPGPGPSSS ARTENPNQQP TYEMSDDNVS EGLNLDNRDE VATWDPMADD 240 FAYWEMLDNE IVNLESWNSI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-32 | 2 | 173 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011626013.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 4e-65 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | W1PYA4 | 0.0 | W1PYA4_AMBTC; Uncharacterized protein | ||||
STRING | ERN13044 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-67 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00040.87 |
Publications ? help Back to Top | |||
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