PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00040.172 | ||||||||
Common Name | AMTR_s00040p00180260, LOC18441367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 15867 Da PI: 9.9783 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 10 | 60 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 sgy+GVr ++ +gr++AeIrd g +++r +lg+f+tae+Aa+a++a ++k++g evm_27.model.AmTr_v1.0_scaffold00040.172 10 SGYTGVRKRP-WGRFAAEIRD----GaHKRRRWLGTFDTAEDAARAYDAEALKIKG 60 89********.**********....8778************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-21 | 10 | 70 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.02E-28 | 10 | 70 | No hit | No description |
Pfam | PF00847 | 1.4E-11 | 10 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.786 | 11 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-32 | 11 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 12 | 23 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-29 | 12 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MAGKRQRNGS GYTGVRKRPW GRFAAEIRDG AHKRRRWLGT FDTAEDAARA YDAEALKIKG 60 PKAKTNFPIS QNTLAPGPLF PSSHNAPLQD EGFNPDQFVA EVLQCVEPQT EVIKWFKIWA 120 MAQMEDRETT VSPSNLGAFM W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-19 | 9 | 73 | 3 | 68 | ATERF1 |
3gcc_A | 6e-19 | 9 | 73 | 3 | 68 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 35 | RKRPWGRFAAEIRDGAHKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006851548.1 | 1e-102 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | W1PYI0 | 1e-101 | W1PYI0_AMBTC; Uncharacterized protein | ||||
STRING | ERN13129 | 1e-102 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 3e-18 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00040.172 |
Entrez Gene | 18441367 |
Publications ? help Back to Top | |||
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