PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00038.113
Common NameAMTR_s00038p00173360
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family CAMTA
Protein Properties Length: 1137aa    MW: 128031 Da    PI: 5.6892
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00038.113genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.54e-56461613118
                                      CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhe 71 
                                               + ++rwl++ e+++iL n++++++++++++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+he
  evm_27.model.AmTr_v1.0_scaffold00038.113  46 EAQNRWLRPAEVCEILRNYHNFHIASDPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHE 114
                                               5599***************************************************************** PP

                                      CG-1  72 kLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                                               +LK g ++vl+cyYah+een++fqrr+ywlLeeele+ivlvhy+evk
  evm_27.model.AmTr_v1.0_scaffold00038.113 115 RLKAGRIDVLHCYYAHGEENENFQRRSYWLLEEELEHIVLVHYREVK 161
                                               ********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.07440166IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7543161IPR005559CG-1 DNA-binding domain
PfamPF038593.6E-5046159IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.9E-6553638IPR013783Immunoglobulin-like fold
PfamPF018331.1E-6553627IPR002909IPT domain
SuperFamilySSF812962.8E-17553638IPR014756Immunoglobulin E-set
CDDcd002046.08E-13740849No hitNo description
Gene3DG3DSA:1.25.40.207.9E-16740852IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.016746851IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.38E-15748851IPR020683Ankyrin repeat-containing domain
SMARTSM002480.16790819IPR002110Ankyrin repeat
SMARTSM00248500829858IPR002110Ankyrin repeat
SMARTSM000150.84965987IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.78E-79661016IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.206968993IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015968986IPR000048IQ motif, EF-hand binding site
SMARTSM000150.00969881010IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.1769891013IPR000048IQ motif, EF-hand binding site
PfamPF006120.00129911010IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MLACFNLFAS QINCIRSVGA YGCAVMAESR HYALSNPLDI SQIVLEAQNR WLRPAEVCEI  60
LRNYHNFHIA SDPPNRPPSG SLFLFDRKVL RYFRKDGHNW RKKKDGKTVR EAHERLKAGR  120
IDVLHCYYAH GEENENFQRR SYWLLEEELE HIVLVHYREV KGNKTGYGRS RDAEKTFQVT  180
PTSSPVHSAS LNSNPSQLHS QTTPGSSMSI GQSEYEDAES GNPQVTSRYK SLLELQQPEY  240
RLQRNQKDAD LLNSYLEVLR TDNIFKSHPL IFTSKGNHHD NQSAAPEMSF VSHDRNNVLE  300
EKNIGGFEMN QLEPRKQMDM ASWSDVLGHG TMGSSDKSVY VGGLPNKQFN GIFEQLFAED  360
ISTKSEALAK PYAQEEWQIA SSEDSSKATA NTRIHTEQGS EPCGNYQQSK YLWMKPHIDQ  420
EPFSIQFGNL KDSCIILKDG SFPEVGHFQE SKSNEDEVGV EEYAVHSRFP EQPLLKSLSK  480
TEGEEGLKKL DSFSRWMSNE FGGEDVVVSS ESRSFWSTLD STDVVDDSRM PHQLNLGTDS  540
LSPSISQDQL FSIIDFSPTW AYSGLDCKVL ITGTFLMNQN QVEKCQWSCM FGEVEVPAQV  600
LTENVLRCHT PSHASGRVPF YVTCSNRVAC SEIREFEFLD CAPEYMDTFT DIDNTSTNEM  660
VLRVRLASLL SLGSSIPVKS LSSNVREETY ISGKINSLLK DNDDEWFQIE NLTDDEDLFP  720
GKAKDQLVQK LLKEKLHAWL LVKAGEDGKG PNVLDTQGQG VLHLTSALGY DWAIAPIVAA  780
GVNINFRDVS GWTALHWAAS CGRERTVAAI IALGGAPGAL SDPTPKFSSG QTPADLASVN  840
GHKGIAGYLA ESALTSHLSK LTIEEAIEDG NELALTSENA LEPTNDEIID QFNDGDSLDG  900
LSLRNSLTAV RNAAQAAARI HEVFRVQSFH RKKLIEYGDD KFGMSDERAL SLISVQKMRK  960
TGNDEPVHAA VRIQRKFRGW KGRKEFLVIR QRIVHLQAFF RGYQVRKHYK KIIWSVGIVE  1020
KAILRWRRKG SGLRGFKPEA SIEGPNAQAE SSQSDDYDFL KVGRRQTEER LDKALARVQS  1080
MVQYPEARAQ YRRLMNVVNE FQESKVDSER LLRQAEEIEY ELIDCVTLEE EDTIMG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853146.30.0calmodulin-binding transcription activator 2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLU5D2P60.0U5D2P6_AMBTC; Uncharacterized protein
STRINGERN146130.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  3. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  4. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  5. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  6. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  7. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  8. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  9. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]