PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00036.175 | ||||||||
Common Name | AMTR_s00036p00232310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | Dof | ||||||||
Protein Properties | Length: 182aa MW: 19885.5 Da PI: 9.2223 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 129.2 | 1.2e-40 | 23 | 83 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s evm_27.model.AmTr_v1.0_scaffold00036.175 23 EQQQLKCPRCESMNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRS 83 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-28 | 23 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.4E-34 | 25 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.357 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MQDQAQMISD KRALKPQSFI DQEQQQLKCP RCESMNTKFC YYNNYNLSQP RHFCKNCRRY 60 WTKGGALRNI PVGGGSRKNT KRSASSTARP KAVAAPENEP VVGNLAGKLA GIYSGVREEE 120 VKMMEITGSF SSLLNSGERG FWGLPESGDS GAPLMLQNEA WIGAAWGPDL AMYTPGTAGL 180 Q* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011626878.1 | 1e-133 | dof zinc finger protein DOF3.1 | ||||
TrEMBL | U5CZ60 | 1e-133 | U5CZ60_AMBTC; Uncharacterized protein | ||||
STRING | ERN15459 | 1e-134 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-40 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00036.175 |
Publications ? help Back to Top | |||
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