PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00030.37
Common NameAMTR_s00030p00089780, LOC18444319
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 430aa    MW: 49350.2 Da    PI: 6.5168
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00030.37genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.82.5e-2296193186
                                 trihelix   1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk 59 
                                              +Wt+++v++Li++++           +m++r ++  +kk++W++vsk m+++ + +sp+qC++k+++lnk
  evm_27.model.AmTr_v1.0_scaffold00030.37  96 KWTDEMVRLLITVVScigedsspefgKMGRRKSTVLQKKGKWKWVSKIMAKKRCYVSPQQCEDKFNDLNK 165
                                              7**************777777766666666666667********************************** PP

                                 trihelix  60 rykkikegekkr.tsessstcpyfdqle 86 
                                              ryk++++  +++ +++++++ +++d ++
  evm_27.model.AmTr_v1.0_scaffold00030.37 166 RYKRLTDVLGRGtSCKVVEHPALLDLMD 193
                                              ************5588888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-2094219No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MQGAVSAGNL LPGTSFTVLD LQGSLGIPQN PNSMAHHQLQ DVYPLSIGQH LGNSFSSERG  60
KNSMSDEEER SLTEDGIENH QDGTPGKKNS PWQRMKWTDE MVRLLITVVS CIGEDSSPEF  120
GKMGRRKSTV LQKKGKWKWV SKIMAKKRCY VSPQQCEDKF NDLNKRYKRL TDVLGRGTSC  180
KVVEHPALLD LMDHLSEKTK EDVRKILSSK HLFYEEMCSY HNGNRLHLPL DPSLQQCVQS  240
VLKGRDADDT RRHAHDDTGE DDHDDDDVDE RDDELDDHNT NNNNANNSSS FHGDDGGFIG  300
VSCFPKRMKL RQDTEEVNFA NSLNPQELNN RLGSEAFASE MNQIMQDGTK AAWAQRQWIR  360
NRTLQLEEQS LSIQAQMLEL EKQRFKWQKF SRKKDRELSK MRMENERMKL ANERLTLELK  420
RKELENELI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381393KQRFKWQKFSRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854556.10.0probable WRKY transcription factor protein 1
TrEMBLU5D6R40.0U5D6R4_AMBTC; Uncharacterized protein
STRINGERN160230.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-104sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]