PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.9
Common NameAMTR_s00029p00026560
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 564aa    MW: 62354.6 Da    PI: 6.8264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.9genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17378472394
                                             EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHH CS
                                      B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeF 68 
                                             k+l +sdv+++gr+vlpkk ae++   + ++e++ l +ed  s+ +W++k++y  ++ks++yv++ ++ +F
  evm_27.model.AmTr_v1.0_scaffold00029.9 378 KELRNSDVGNLGRIVLPKKDAEANlpLLTEREGQILHMEDmDSSAVWKFKFRYwpNNKSRMYVME-NTGDF 447
                                             8899**********************77788999******7777*********888888889988.***** PP

                                             HHHHT--TT-EEEEEE-SSSEE..EE CS
                                      B3  69 vkangLkegDfvvFkldgrsefelvv 94 
                                             vk + L +gDf++++ d+  +++++v
  evm_27.model.AmTr_v1.0_scaffold00029.9 448 VKTHCLGTGDFFIIYKDE-AREKYMV 472
                                             **************9333.5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.769376476IPR003340B3 DNA binding domain
SMARTSM010192.9E-15376478IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-25376481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-19377472IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-21378473No hitNo description
PfamPF023629.0E-14378472IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MRRTAKPEII HESTKEAGRN REGDGSVSGS PVQVSRSDSK ISVPVSSSTS PGGIGTSEVE  60
NGHEFSGWIS GEIAGSRSMS DTQIKHQLFG PTGSVLPVDS FVNLEQSVRV GGRETIDFKQ  120
VFQVNQRFTF PASSVQPQPG YFHGSETCFS QKVDLNSMFA PSNSFDINGE RLWRSDATGS  180
SYSVPCNSYD NALISSNAPS NLKRMIDIST DQYLLPTSIC PNPVYQASSR PNSPITYQHL  240
FPVSTRDSCN SNACCKHGEE FGNHAFSSSG YSRASEVPEY DGSTDNDVFA SRKRKVVPQR  300
RLNMKLGVNL DGNKNAYFGH DHNGLQLPKH GELGAFETNP CLHQLGRPSS SRHKVAAENL  360
AKDDKELEVK GLMLALRKEL RNSDVGNLGR IVLPKKDAEA NLPLLTEREG QILHMEDMDS  420
SAVWKFKFRY WPNNKSRMYV MENTGDFVKT HCLGTGDFFI IYKDEAREKY MVRGKKGAAQ  480
IESLGSVLSN CESQDFSDKE REISTGFSGE QTKAMAPYHL MSKPKSECLP ASFSMDFERE  540
ANGLSFDPLL LDLNPDMSFN RHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-343704707107B3 domain-containing transcription factor LEC2
6j9c_D3e-343704707107B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524950.10.0uncharacterized protein LOC110007583 isoform X1
TrEMBLW1PMU70.0W1PMU7_AMBTC; Uncharacterized protein
STRINGERN093780.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-36B3 family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]