PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00028.24 | ||||||||
Common Name | AMTR_s00028p00089390, LOC18438749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | SAP | ||||||||
Protein Properties | Length: 445aa MW: 48585.4 Da PI: 4.923 | ||||||||
Description | SAP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SAP | 477.5 | 8.5e-146 | 2 | 443 | 5 | 454 |
SAP 5 sssssseseegseggeggdass.....gesegpsssrqr.aanevwpePflealatqvaidasrslGrla 68 sss ++ +++g+e+ ++ s + ++s r + ++n+vwpePf+e+la++va++a +s+G la evm_27.model.AmTr_v1.0_scaffold00028.24 2 SSSTENGEDSGEEEAVAST--SrletrRRVSASSAARLIaSTNGVWPEPFVESLAVNVAMEAYNSVGPLA 69 2222333333332222222..123333455566666666689**************************** PP SAP 69 aasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfd 138 a +alan+f vcstwr+vs s+ lw+ l++ +W ++l r+ Wr ey +rhrta+nfr+r+++++tlq++ evm_27.model.AmTr_v1.0_scaffold00028.24 70 AGPALANLFMVCSTWRSVSTSETLWRVLCSNVWGFSTLTRASWRSEYAFRHRTASNFRNRQSRHFTLQLE 139 ********************************************************************** PP SAP 139 padvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisd 208 p++ a++ +Cr++ lsd+yla Gf dG+vr fdl+tr+h+ + p h drlG++sravsG+vi + evm_27.model.AmTr_v1.0_scaffold00028.24 140 PTSP-----ASTPTCRRIGLSDRYLALGFLDGSVRAFDLRTRAHLGSYCPAHSDRLGPYSRAVSGLVIDN 204 *843.....34678******************************************************** PP SAP 209 srlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaetee 278 rlvfa ldG+++ i g rr+l+G+vv++G+ vdf G+gr+wvGl+aGvpGra ++Wda tee evm_27.model.AmTr_v1.0_scaffold00028.24 205 DRLVFALLDGNVYEGDISG---WVFRRVLAGNVVDNGTCVDFNGNGRFWVGLFAGVPGRAVRVWDAVTEE 271 *****************99...679********************************************* PP SAP 279 lvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivs 348 + fvGG ltdP+av+GW +lte ++Grvrv +vaCt++r+ v+ + ++ +++ + ++v+ evm_27.model.AmTr_v1.0_scaffold00028.24 272 TLFVGGDLTDPDAVRGWRLLTEPHRTLGRVRVGAGGLVVACTESRVSVV-FGAEDEIYE---SFGDFMVG 337 *********************************************9655.344455555...5678**** PP SAP 349 sldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegy 417 ++da+ e +vv + at+r +l++ c+f+v+g a+ + lgC+n + v++ gv+ W++ + e evm_27.model.AmTr_v1.0_scaffold00028.24 338 CFDAHGERCLVVSRDEEATIRHLPDLNRTCEFEVEGvATNEALGCMNWTQGFVCSEGVIGTWDLRSGE-N 406 ************************************999*************************9977.8 PP SAP 418 lyslrervgevnalvaddrhvavsssdgtihlldfga 454 ly++re ge+ a+vadd hva+ ++d+ +hl+ f+a evm_27.model.AmTr_v1.0_scaffold00028.24 407 LYHFREDLGEATAIVADDLHVAAVTTDALLHLWSFAA 443 9**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.1280.50 | 1.1E-7 | 74 | 137 | No hit | No description |
SuperFamily | SSF81383 | 3.49E-8 | 74 | 122 | IPR001810 | F-box domain |
SuperFamily | SSF50978 | 5.4E-16 | 143 | 280 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 2.2E-13 | 145 | 441 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 5.4E-16 | 331 | 440 | IPR017986 | WD40-repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0030163 | Biological Process | protein catabolic process | ||||
GO:0046622 | Biological Process | positive regulation of organ growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MSSSTENGED SGEEEAVAST SRLETRRRVS ASSAARLIAS TNGVWPEPFV ESLAVNVAME 60 AYNSVGPLAA GPALANLFMV CSTWRSVSTS ETLWRVLCSN VWGFSTLTRA SWRSEYAFRH 120 RTASNFRNRQ SRHFTLQLEP TSPASTPTCR RIGLSDRYLA LGFLDGSVRA FDLRTRAHLG 180 SYCPAHSDRL GPYSRAVSGL VIDNDRLVFA LLDGNVYEGD ISGWVFRRVL AGNVVDNGTC 240 VDFNGNGRFW VGLFAGVPGR AVRVWDAVTE ETLFVGGDLT DPDAVRGWRL LTEPHRTLGR 300 VRVGAGGLVV ACTESRVSVV FGAEDEIYES FGDFMVGCFD AHGERCLVVS RDEEATIRHL 360 PDLNRTCEFE VEGVATNEAL GCMNWTQGFV CSEGVIGTWD LRSGENLYHF REDLGEATAI 420 VADDLHVAAV TTDALLHLWS FAAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006848994.1 | 0.0 | transcriptional regulator STERILE APETALA | ||||
TrEMBL | W1PTG1 | 0.0 | W1PTG1_AMBTC; Uncharacterized protein | ||||
STRING | ERN10575 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9756 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35770.1 | 1e-109 | SAP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00028.24 |
Entrez Gene | 18438749 |
Publications ? help Back to Top | |||
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