PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00025.396 | ||||||||
Common Name | AMTR_s00025p00247140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 26057.5 Da PI: 6.304 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63 | 4.6e-20 | 19 | 107 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 ffk++ +++++ l +p f ++ +k + +le +sg+ W+v++ + +g+ +++GWk+Fv evm_27.model.AmTr_v1.0_scaffold00025.396 19 FFKIM--LGNFSKQ-LFIPPAFR-HNFKK--IFHEAVLEGPSGNNWNVEV--EEVRGALCFSRGWKKFV 79 66777..6666665.9*****96.44323..4559***************..***************** PP HHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 70 kangLkegDfvvFkldgrsefelvvkvfrk 99 k++ L++gDf+vF++dg++ f ++k+f+k evm_27.model.AmTr_v1.0_scaffold00025.396 80 KDHSLNDGDFLVFYYDGDTHF--LIKIFNK 107 ****************98888..****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.493 | 16 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-21 | 16 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-22 | 17 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.65E-22 | 18 | 106 | No hit | No description |
SMART | SM01019 | 3.5E-17 | 19 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-18 | 19 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MYQEDRFCVH DEEDGGQSFF KIMLGNFSKQ LFIPPAFRHN FKKIFHEAVL EGPSGNNWNV 60 EVEEVRGALC FSRGWKKFVK DHSLNDGDFL VFYYDGDTHF LIKIFNKTGC EREDAFDVEC 120 FEKHSPVEKN MPDCPLAIVE ASENPLCIAE KQWSPKKWHR TYTSTTSPVT EKQKEEAIQK 180 AQSFRTNCPH FVVPMRCSLV STTFMVVCAL ITQTSMESNG ATESRR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020526763.1 | 1e-155 | B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | W1PRQ5 | 1e-170 | W1PRQ5_AMBTC; Uncharacterized protein | ||||
STRING | ERN12682 | 1e-171 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP12568 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 6e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00025.396 |
Publications ? help Back to Top | |||
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