PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.268
Common NameAMTR_s00025p00207310
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 329aa    MW: 38151.5 Da    PI: 7.8278
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.268genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.65.9e-17748950
                                              HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                    SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                              r+ tf kR++g+ KKA+E S+LC+++ +++ fs++g l +++
  evm_27.model.AmTr_v1.0_scaffold00025.268  7 RNDTFRKRKKGLKKKASEFSILCGVDTCLVSFSPNGDLETWP 48
                                              777**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.171151IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-6149IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-20486IPR002100Transcription factor, MADS-box
PfamPF003197.1E-17547IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-51328IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-52849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRPNQRNDT FRKRKKGLKK KASEFSILCG VDTCLVSFSP NGDLETWPED KSACMNVVQR  60
YMSLPKEHRE KKMLNSTGFV KDKIKKVQEK LDSLRRENSA ILYPSWDDRL DHMSVEYLAA  120
LANRLNAMIS FLRERLSMGN VGVVQKMEEQ EVREIERGEM INPHLLNQLL TCNFPVMNVE  180
PISMKPSENL GLHEGLYRPS ENLELHEGLY RAGEMEQFQN VNFGVSPLMG FDPKNNVLTP  240
PLNCVPSRSD FMGQYQVKNE RERNIFMDFE KSGERNMLIK KLYDQEQYSH GHFLSHCNNY  300
NYNNVHLPST DRKNYMGLPS QSHQCFEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11115RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526799.10.0MADS-box transcription factor 25-like
TrEMBLW1PX820.0W1PX82_AMBTC; Uncharacterized protein
STRINGERN125540.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-15AGAMOUS-like 103
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]