PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00024.221 | ||||||||
Common Name | AMTR_s00024p00224180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35537.4 Da PI: 6.7714 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 46 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTt+Ed++l d+++ +G g W+t +++ g++R++k+c++rw++yl evm_27.model.AmTr_v1.0_scaffold00024.221 46 RGAWTTQEDKILTDYINTHGEGKWRTLPKKAGLKRCGKSCRLRWLNYL 93 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 99 | 143 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ evm_27.model.AmTr_v1.0_scaffold00024.221 99 RGNISDEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 143 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.103 | 41 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.42E-28 | 44 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-13 | 45 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 46 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 47 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.75E-9 | 48 | 93 | No hit | No description |
PROSITE profile | PS51294 | 25.201 | 94 | 148 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-16 | 98 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-15 | 99 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 101 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.47E-11 | 103 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MFLVCVGGRI RRQKTEAKSL IEPSQERIKV LEMGRSPCCS KEGLNRGAWT TQEDKILTDY 60 INTHGEGKWR TLPKKAGLKR CGKSCRLRWL NYLRPDIKRG NISDEEEDLI IRLHKLLGNR 120 WSLIAGRLPG RTDNEIKNYW NTNLGKKVQQ GSTKGPSPTL KRWESMAKKE DERSDPVEAR 180 VVRTKASRCT RLKAPPHLLT PIVPTVSMTE PMAHESEPTH CTAPKTPSFP STFMDFDLGD 240 LCIDTQFIQS CGELMLERKE DEFDRLSLSP QQNLSLDGGE WMEEEFEEGN ASHEFQSLAA 300 FLDSEEDWLT E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 44 | 148 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849641.3 | 0.0 | anthocyanin regulatory C1 protein | ||||
Swissprot | Q9FJA2 | 7e-62 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | W1PMJ4 | 0.0 | W1PMJ4_AMBTC; Uncharacterized protein | ||||
STRING | ERN11222 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-64 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00024.221 |