PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00023.14 | ||||||||
Common Name | AMTR_s00023p00044590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 42359.9 Da PI: 6.5075 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 66 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f ta Aa a+++a+++++g evm_27.model.AmTr_v1.0_scaffold00023.14 66 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTALAAALAYDEAARAMYG 116 56*****999.**********8...2.359***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-19 | 66 | 126 | No hit | No description |
Pfam | PF00847 | 2.1E-12 | 66 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.351 | 67 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-30 | 67 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 67 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 67 | 125 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.4E-9 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-9 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MLHRRRKTRS RRHGCNSVAE TLARWKALNS HPEGSKDAPK WVRKVPAKGS KKGCMRGKGG 60 PENSRCNYRG VRQRTWGKWV AEIREPNRGN RLWLGTFPTA LAAALAYDEA ARAMYGSCAR 120 LNLPDTTESS LTSSISHSNS AEVSSHQIHL DQHSDRGKTG IEGDFDNRGS HALSNTAEVS 180 SHHNATHSSN PAEVSSHHDA THPYPSLDGD KIKIKSEYEN ISFACRPISS HHTCLEPSDG 240 GKIGIEREFE NMGFKRDEIV SNGPGVKLEA AEENLHQRPE VFQVDDMFDV QELLGMMDEE 300 EAGSPSGAHV ERDCLASPSA LSFQLNNPDA KLLGSLYHMD QLGTPYHMEQ GPALDYLGMQ 360 DYGFSKAFEE QAEDMNFPDL CF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 67 | 124 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828126.2 | 0.0 | ethylene-responsive transcription factor CRF1 isoform X1 | ||||
TrEMBL | W1NID0 | 0.0 | W1NID0_AMBTC; Uncharacterized protein | ||||
STRING | ERM95542 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00023.14 |
Publications ? help Back to Top | |||
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