PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00023.118 | ||||||||
Common Name | AMTR_s00023p00181320, LOC18423566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | WOX | ||||||||
Protein Properties | Length: 164aa MW: 18897.7 Da PI: 9.8656 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a ++++++++l +++ ++V++WFqN++a++++ evm_27.model.AmTr_v1.0_scaffold00023.118 7 TRWCPTAEQLMILEEMYRGgIRTPNALQIQHITTHLsyygKIEGKNVFYWFQNHKARDRQ 66 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117.8 | 4.9e-38 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+Pt+eQ++iLee+y+ G+rtPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk evm_27.model.AmTr_v1.0_scaffold00023.118 5 VSTRWCPTAEQLMILEEMYRGGIRTPNALQIQHITTHLSYYGKIEGKNVFYWFQNHKARDRQK 67 589***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.394 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0018 | 4 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.4E-17 | 7 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MPQAVSTRWC PTAEQLMILE EMYRGGIRTP NALQIQHITT HLSYYGKIEG KNVFYWFQNH 60 KARDRQKLRR KMIKQQQQLP TPQHEAASFS LTQIPPRFYE EQCRSIGFMC MLPKPEVEAP 120 TAQMDSAPRY RALETLDLFP VRSTGIKEEK PRSTALHVST SSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | KLRRKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM882142 | 3e-69 | FM882142.1 Amborella trichopoda partial wox3 gene for putative wuschel homeobox protein WOX3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006828230.1 | 1e-120 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | W1NJL1 | 1e-119 | W1NJL1_AMBTC; Uncharacterized protein | ||||
STRING | ERM95646 | 1e-120 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 5e-41 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00023.118 |
Entrez Gene | 18423566 |
Publications ? help Back to Top | |||
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