PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.374
Common NameAMTR_s00022p00248190, LOC18439977
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 379aa    MW: 43318.5 Da    PI: 6.9903
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.374genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-161859950
                                              HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                                    SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                              r+ tf kRr+g+ KKA+E S+LC+++ + i f+++g l +++
  evm_27.model.AmTr_v1.0_scaffold00022.374 18 RSDTFRKRRKGLKKKASEFSILCGVDTCFICFGPNGDLETWP 59
                                              788**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-10160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.773162IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-19296IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161858IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-52439IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-53960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGRAKLPMNN IMGRANPRSD TFRKRRKGLK KKASEFSILC GVDTCFICFG PNGDLETWPE  60
DRSACMAVIK RFQSLSKDDQ DKKKQNLSSF LTQRIMKVRE DLLCKRKENA EILYPSWDDR  120
LADFSSDRIE ALTRHLDWKI STVRERIELE MASVSIKEGG EARAQNTVPY PMRTSDFRPL  180
CVKKPMGLED SYIAMDPINQ MGLGLMSENY TGMGGVDMGV GDYSLGMEYI GAQPLRWMPD  240
GGKLLGFDER VRRFSAPMDN KLGVFYDRED VKFVDFEERE RGDRERSMKL PMDAPCTYEP  300
QFAMQNPNPN YTIYQGSSST SNYTISSSLG PFMQVPSHHP RMLPHVPMTQ PFLPRQQQWV  360
GLEEQPGMAH VCDDFYEV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850194.10.0agamous-like MADS-box protein AGL80
TrEMBLW1PWN40.0W1PWN4_AMBTC; Uncharacterized protein
STRINGERN117750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-16AGAMOUS-like 103
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]