PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.360
Common NameAMTR_s00022p00244920
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 442aa    MW: 50008.6 Da    PI: 5.7114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.360genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.72e-25117214186
                                  trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenln 58 
                                               +W++++v++Li+++++++e+   +            +kk++W+ vsk m+e+g+++sp+qC++k+++ln
  evm_27.model.AmTr_v1.0_scaffold00022.360 117 KWSDHMVRLLITVVSYVGEDGTPDGesghkrkggilQKKGKWKTVSKIMMEKGCSVSPQQCEDKFNDLN 185
                                               7*****************999975346677889999********************************* PP

                                  trihelix  59 krykkikegekkr.tsessstcpyfdqle 86 
                                               kryk+++++ +++ t++++++ +++d+++
  evm_27.model.AmTr_v1.0_scaffold00022.360 186 KRYKRLNDILGRGtTCRVVENPSLLDSMN 214
                                               *************77***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-21115240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGSGLLSGPS PSILGLDASI HRHQQHHLTH QQLPHQHHMH AMAALSVDHH NNTGMEGDQS  60
FSILEPKNPS KNLGIGTRVK NTSNTSDEDE PSYNEDGTDG QFIGAKGKKG SPWQRMKWSD  120
HMVRLLITVV SYVGEDGTPD GESGHKRKGG ILQKKGKWKT VSKIMMEKGC SVSPQQCEDK  180
FNDLNKRYKR LNDILGRGTT CRVVENPSLL DSMNHLSAKT KDDVRKILSS KHLFYKEMCA  240
YHNGQRISNV HEVHPLMLCK SRETQDGCDF VKDDNGFGGD EDEDEENDDD ELDNDDDDDD  300
DGDDDDGNVG DGDGERMVSL GKRKKVNENE GCFWPQGIVS ECGKTGVAEN FGVEMAGMLP  360
DNAKSPWEQR ELIKSRVLQL QEQRVGLQAQ AFELEKRRFR WQKFCSKKDR ELERLKLENE  420
RMRLDNERMS LQMRQKELDM E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406415KKDRELERLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850180.20.0putative uncharacterized protein DDB_G0287265
TrEMBLW1PVN80.0W1PVN8_AMBTC; Uncharacterized protein
STRINGERN117610.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-72sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]