PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00022.163
Common NameAMTR_s00022p00160350
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 175aa    MW: 19659.4 Da    PI: 7.5435
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00022.163genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1791.3e-55151431128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                               lppGfrFhPtdeel+++yL+ kv + + ++   i+evd++++ePw+Lp+ +k +ekewyfFs rd+ky+
  evm_27.model.AmTr_v1.0_scaffold00022.163  15 LPPGFRFHPTDEELIMFYLATKVFNPSGSTPVSIAEVDLNRCEPWELPEIAKMGEKEWYFFSLRDRKYP 83 
                                               79**********************999777556***************8888899************** PP

                                       NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                               tg+r+nrat++gyWkatgkd+e++s+ +g lvg+kktLvfy+grapkg+kt+Wvmheyrl
  evm_27.model.AmTr_v1.0_scaffold00022.163  84 TGHRTNRATDAGYWKATGKDREIHSAtNGVLVGMKKTLVFYRGRAPKGQKTNWVMHEYRL 143
                                               ************************9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6110153IPR003441NAC domain
PROSITE profilePS5100556.52415158IPR003441NAC domain
PfamPF023659.3E-2916143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEGVCLCEET NEQGLPPGFR FHPTDEELIM FYLATKVFNP SGSTPVSIAE VDLNRCEPWE  60
LPEIAKMGEK EWYFFSLRDR KYPTGHRTNR ATDAGYWKAT GKDREIHSAT NGVLVGMKKT  120
LVFYRGRAPK GQKTNWVMHE YRLQGDFSYH LACKLDASTV GVAAASPVGH GWIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-5031568158NAC domain-containing protein 19
3swm_B4e-5031568158NAC domain-containing protein 19
3swm_C4e-5031568158NAC domain-containing protein 19
3swm_D4e-5031568158NAC domain-containing protein 19
3swp_A4e-5031568158NAC domain-containing protein 19
3swp_B4e-5031568158NAC domain-containing protein 19
3swp_C4e-5031568158NAC domain-containing protein 19
3swp_D4e-5031568158NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR6680790.0FR668079.1 Amborella trichopoda mRNA for CUC3 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292757.11e-114uncharacterized protein LOC18439762
SwissprotQ9S8512e-77NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLW1PUQ61e-129W1PUQ6_AMBTC; Uncharacterized protein
STRINGERN115641e-130(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-80NAC family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]