PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.220
Common NameAMTR_s00021p00226670, LOC18442332
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 561aa    MW: 62780.1 Da    PI: 6.3901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.220genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13399445455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  evm_27.model.AmTr_v1.0_scaffold00021.220 399 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 445
                                               799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-5351238IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF557813.81E-6149239IPR029016GAF domain-like
SuperFamilySSF474595.37E-18394457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-14398449No hitNo description
Gene3DG3DSA:4.10.280.101.4E-17399458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10399445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-17401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MKAEMVSARV WSGEDKATIE AILGPKAVEF LTTTKFSFEG LVMATTADCN LQNKLCDLVE  60
GHHFSKFSWN YAIFWQISSS KSGELVLGWG DGYCKEPKEE EVVSENGLDL CNEKETQQKM  120
RKRVLELLHL FFGGSDEENY ELGLDRVSDT EMFYLVSMYF SFPNGFGIPG RVFRTRKPLW  180
LCDGPNSLAD YCYRTFIARL TGIQTLVCIP VANGVLELGS IESIPQDQEA LHKIVSVFAH  240
NDGQPNLRSN AWAFSSPTPL KSERPPSPLI EKNPKIFGQD LKLVQSQVER HYSVFNPSQE  300
NIGLCDNGER ISSIGNAKAL QAFNWNRIHG GNMGCTNGGA EKNRVNQIQQ QKQHKQISFN  360
GDHSDAEATC RESKLPQSSE RKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  420
VVPNISKMDK ASLLGDAIAY INELQNKLKD IETENEKQAS SDLMEMALET EDQNKGVSQI  480
DIEVQSSSNE VLVKIECGLN EHPVSKIINL LREAQVTVEE PKISLSGDTV LHTFVIKSLG  540
IERVTKDKLV SALSKLSNGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-31512419195Transcription factor MYC3
4rqw_B2e-31512419195Transcription factor MYC3
4rs9_A2e-31512419195Transcription factor MYC3
4yz6_A2e-31512419195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380388RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852614.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ21e-176MTB1_SOLLC; Transcription factor MTB1
TrEMBLW1Q0R80.0W1Q0R8_AMBTC; Uncharacterized protein
STRINGERN140810.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-123ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]