PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00021.144
Common NameAMTR_s00021p00185480
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 214aa    MW: 23682.3 Da    PI: 9.0806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00021.144genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-2087138256
                                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                               +y+GVr+++ +g+++AeIrd s    + +r++lg+f+taeeAa a+++a+ k++g+
  evm_27.model.AmTr_v1.0_scaffold00021.144  87 HYRGVRRRP-WGKFAAEIRDSSR---QgARVWLGTFDTAEEAAMAYDKAAFKMRGP 138
                                               7********.**********422...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-3286145IPR001471AP2/ERF domain
PfamPF008471.1E-1587137IPR001471AP2/ERF domain
SMARTSM003801.1E-3787151IPR001471AP2/ERF domain
PROSITE profilePS5103224.14487145IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2487146IPR016177DNA-binding domain
CDDcd000182.69E-2987146No hitNo description
PRINTSPR003671.7E-118899IPR001471AP2/ERF domain
PRINTSPR003671.7E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVPLNKASRD PHMRVSELPL NENDSLDMIL FDVLNEAIGK GWSPKKEEEE EVQQQQQQHQ  60
QSRHHEVSVG EHTPTAHQTG QQLNKRHYRG VRRRPWGKFA AEIRDSSRQG ARVWLGTFDT  120
AEEAAMAYDK AAFKMRGPKA LLNFPAYVVA TALVGSRGKP APIERKISSQ QRQRLGRDCS  180
VSSASSSSSF EGEGEGEGEG EGRFWGGASR LGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3086148466ATERF1
3gcc_A4e-3086148466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strong induction by ethylene and by wounding. {ECO:0000269|PubMed:12935902}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852538.31e-157ethylene-responsive transcription factor 1
SwissprotQ84XB33e-41ERF1_SOLLC; Ethylene-responsive transcription factor 1
TrEMBLW1Q1091e-156W1Q109_AMBTC; Uncharacterized protein
STRINGERN140051e-157(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.17e-28ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]