PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00019.292 | ||||||||
Common Name | AMTR_s00019p00225230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | AP2 | ||||||||
Protein Properties | Length: 490aa MW: 53799.5 Da PI: 7.0932 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 9.9e-12 | 139 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g evm_27.model.AmTr_v1.0_scaffold00019.292 139 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 195 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.3 | 5e-15 | 238 | 289 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm_27.model.AmTr_v1.0_scaffold00019.292 238 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 289 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-9 | 139 | 195 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.99E-20 | 139 | 205 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-15 | 139 | 205 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.57 | 140 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-23 | 140 | 209 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-12 | 140 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 141 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-10 | 238 | 289 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 238 | 299 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.27E-25 | 238 | 299 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 239 | 297 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 239 | 303 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 239 | 298 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 279 | 299 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MDCSNNWLAF SLSSNPPHQT PPEPSPQLCL LEAFNTSGWP KDNTHREEGS GGGDLSMIAS 60 AAPPKLEDFL GGAFSGHYSG DFSGNHARKP NTNYDSDLKS IAQGVLQVFP TSQSEVEKSI 120 LASDSSTKKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE 180 KAARAYDLAA LKYWGPSTTT NFPVSNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY 240 RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR 300 YDVKSIANSN LPIGGITNKT KASSESSSSD IKTLETKLTD EQELSSLSPQ SEPISFAIPI 360 KLDHDWSLMG YQNPSRIEPF HNVSSMTSSA INEAPLTMDF STNSSTYQSN NCFINGGFTA 420 QQSLPSVTSI DSENGKALYY LYQNPSSLYR SSACENAGYG AWVAPPLPAF PSSKTPGLAL 480 CQTPIFGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020523524.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-133 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | W1PHY5 | 0.0 | W1PHY5_AMBTC; Uncharacterized protein | ||||
STRING | ERN07324 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-129 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00019.292 |