PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00019.159
Common NameAMTR_s00019p00163540
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family Trihelix
Protein Properties Length: 342aa    MW: 38223.9 Da    PI: 9.31
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00019.159genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.3e-1650136186
                                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkik 65 
                                               +W++  v  L++++++++   +r+klk+ +We++++++  r  g   +++p+qCk+k+e+++kry+++ 
  evm_27.model.AmTr_v1.0_scaffold00019.159  50 EWSEGGVTSLLDIYESKWLLRNRAKLKGSDWEDIARQVsmRNSGTkpSKTPNQCKNKIESMKKRYRAEI 118
                                               5***********************************9988555554489******************** PP

                                  trihelix  66 egekkrtsessstcpyfdqle 86 
                                               + ++      ss ++++++++
  evm_27.model.AmTr_v1.0_scaffold00019.159 119 ACNSLS---GSSAWQFYNRMD 136
                                               ****94...5669******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.29543111IPR017877Myb-like domain
PfamPF138376.3E-2048137No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAALQGSHHL MVERSSGRAQ AEFRPSDCVQ LPQVEEISTV KTPERVKRDE WSEGGVTSLL  60
DIYESKWLLR NRAKLKGSDW EDIARQVSMR NSGTKPSKTP NQCKNKIESM KKRYRAEIAC  120
NSLSGSSAWQ FYNRMDGLLR GAYSSQVRIN GDGAGEPVVT DLGLQALPKV ELDNSEQELK  180
RGTEMGRPQN QEVAEVEGQI QESNQEDGSN TLPDRKDSRN EDSDTSTPKS KLGDCGDGSR  240
KGARYKRRKI RENESELAGS IRALADSILK IEHARVEMYK ESERLRAEVE VKRSEMELKR  300
TEVIAKTQLQ IAKLLSKRIR NQSNKRMGPP PSGSGAEETM G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845516.20.0trihelix transcription factor ASIL2
TrEMBLW1PHW10.0W1PHW1_AMBTC; Uncharacterized protein
STRINGERN071910.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-59sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]