PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00018.27
Common NameAMTR_s00018p00071850, LOC18436362
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family NAC
Protein Properties Length: 568aa    MW: 63464.2 Da    PI: 6.065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00018.27genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-5291371128
                                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkky 68 
                                              lppGfrF+P+deelv++yL +k++g    + +vi+e+d++k+ePwdLp k  +k+e+ ew+fF++rd+ky
  evm_27.model.AmTr_v1.0_scaffold00018.27   9 LPPGFRFRPSDEELVSYYLIRKINGGG-GV-DVIPEIDMCKCEPWDLPgKsIIKTEDPEWFFFCPRDRKY 76 
                                              79***********************99.34.68***************6446777888************ PP

                                      NAM  69 atgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                              ++g+r+nrat++gyWkatgkd++++sk +++l+g+kktLvfy+grap+g++t+W+mheyr+
  evm_27.model.AmTr_v1.0_scaffold00018.27  77 PNGRRSNRATEAGYWKATGKDRTIKSKsRRSLIGTKKTLVFYEGRAPHGKRTHWIMHEYRA 137
                                              **************************977788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-593160IPR003441NAC domain
PROSITE profilePS5100558.9379160IPR003441NAC domain
PfamPF023655.5E-2810136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAAVSLESLP PGFRFRPSDE ELVSYYLIRK INGGGGVDVI PEIDMCKCEP WDLPGKSIIK  60
TEDPEWFFFC PRDRKYPNGR RSNRATEAGY WKATGKDRTI KSKSRRSLIG TKKTLVFYEG  120
RAPHGKRTHW IMHEYRANGN ALQDLNGSQD AYVLCRLFKK DGLNEKGNDP SYDVVERSDL  180
SPDPSKSSPG GAVINGDHGE QLDQTSKLKV ETNVQDTSSP EMTDSDYLNN LLEEFLAADD  240
SLQPIESEQH YKGDEAQEAS DLFRVLDYEP LALEKAIHMP PSSSFCSNPG TFDGEGFEAS  300
TGDLDGLGVV NLHNPSSVPS TEFFDDLFNF DEEGHVREWD GGHNPSLKIG HSQSGIVRRE  360
RQPGPRYNPP VLPFQGTASR RICLQMQSIG GALHEAEEEE EREKDRGTVR AVLQGLEYKT  420
EIDTPPVIQF QGAEVEEGLQ HESYPRVAQL ARRRPKKKVL RRSPTRAMGS GPSEEGKVRE  480
TYMRPMSRMI HEPHSDAESS NKRGMVEQRL GALNVNVEEI DTNSSRGVTK PNRLRIPKSL  540
KIGRAVALSV FAILLVTVLI FVKVFFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-46816616171NO APICAL MERISTEM PROTEIN
1ut4_B1e-46816616171NO APICAL MERISTEM PROTEIN
1ut7_A1e-46816616171NO APICAL MERISTEM PROTEIN
1ut7_B1e-46816616171NO APICAL MERISTEM PROTEIN
3swm_A1e-46816619174NAC domain-containing protein 19
3swm_B1e-46816619174NAC domain-containing protein 19
3swm_C1e-46816619174NAC domain-containing protein 19
3swm_D1e-46816619174NAC domain-containing protein 19
3swp_A1e-46816619174NAC domain-containing protein 19
3swp_B1e-46816619174NAC domain-containing protein 19
3swp_C1e-46816619174NAC domain-containing protein 19
3swp_D1e-46816619174NAC domain-containing protein 19
4dul_A1e-46816616171NAC domain-containing protein 19
4dul_B1e-46816616171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846446.10.0protein NTM1-like 9 isoform X1
RefseqXP_011624193.10.0protein NTM1-like 9 isoform X1
TrEMBLW1PKD30.0W1PKD3_AMBTC; Uncharacterized protein
STRINGERN081210.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-74NAC transcription factor-like 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]