PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.337
Common NameAMTR_s00016p00255950
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 662aa    MW: 69997.8 Da    PI: 8.5562
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.337genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09227271144
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                                               r++WT eEd+ l+ av++ G g+W+ I +      Rt+ q+  rw
  evm_27.model.AmTr_v1.0_scaffold00016.337 227 RKPWTSEEDKELIAAVQKCGEGNWANILKGDFkHDRTASQLSQRW 271
                                               789************************974223566666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.635222279IPR017930Myb domain
SuperFamilySSF466896.7E-13223275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-15223280IPR009057Homeodomain-like
SMARTSM007171.9E-10226277IPR001005SANT/Myb domain
PfamPF002497.3E-8227271IPR001005SANT/Myb domain
CDDcd116604.11E-15228276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MHAKIMLRQG RKAPTVGTHP YTDCRKSEHV MMLEMKKKGL ISEEDASLLL QRYTATTILA  60
LLQEVAQFAG PKVDWNVLVK KTSTGISNAR EYQMLWRHLA YRTALAEKLE DDAEPMDDDS  120
DLEFEVEASP TPSNEALAEA TACVKVLIAS SDPGPSNRTI IEAPLTINVP NNAQTLPAQS  180
ENRNSSCTGQ GTNITVPVSV QKQPLPTVTS AEGLNSNGVA GLPRRKRKPW TSEEDKELIA  240
AVQKCGEGNW ANILKGDFKH DRTASQLSQR WSIIKKKQAN SDSKVGGSSN SSALTEAQQA  300
TRQAVSIALN MPISSNTLSS GGSGTFSSIV RPPAPLFSQV PQQGPDQAHR GPSKARPPAK  360
KATPTQGQAQ MKPTNGPNPL VQAAAVAAGA RIAPASTVAS LLKAAQSGNV VHFGPPKPLA  420
GPSGPVKLSG TRPASGINGT TMFTGPRPAN VHYITTSDNP TPPVYTGMTP TFQRPNGSGR  480
GRTQTRPMNA DMGPVGLGSA RMVSIGSSST SGVGEGVKGE ECVKVGLAEE LKETPTEKNQ  540
SMIESTSMES SGDLERDLTK EQIQPAIQNV GMGNNSGIAE IDLAKEKSTL AIKVLVAEEN  600
SGNVERGSGQ VQSQPLIENA GDTEREKPDM VIEQNQVVKR LRTEKSGSVE SGKIDCVDSG  660
G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623501.10.0uncharacterized protein LOC18434619 isoform X1
RefseqXP_020522963.10.0uncharacterized protein LOC18434619 isoform X1
RefseqXP_020522964.10.0uncharacterized protein LOC18434619 isoform X1
TrEMBLW1PFC10.0W1PFC1_AMBTC; Uncharacterized protein
STRINGERN064240.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-68MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]