PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.54
Common NameAMTR_s00013p00108490
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family B3
Protein Properties Length: 373aa    MW: 40834.6 Da    PI: 6.6885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.54genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B389.42.8e-2891188187
                                              EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEE CS
                                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgry 59 
                                              f+k+ltpsdv+k++rlv+pkk+a ++           ++++  +++lt++d+  ++W+++++y+k+s+++
  evm_27.model.AmTr_v1.0_scaffold00013.54  91 FQKELTPSDVGKLNRLVIPKKHAVKFfpavsesgeieDENSGVDVQLTFMDRGHKTWTFRYCYWKSSQSF 160
                                              99*****************************9998885555677899*********************** PP

                                              EE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                       B3  60 vltkGWkeFvkangLkegDfvvFkldgr 87 
                                              v+t+GW++Fvk++ Lke+D+vvF++ g+
  evm_27.model.AmTr_v1.0_scaffold00013.54 161 VFTRGWNRFVKEKCLKEKDVVVFYRCGS 188
                                              ************************7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-3489191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2889190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-2690191No hitNo description
SMARTSM010196.7E-2391205IPR003340B3 DNA binding domain
PROSITE profilePS5086311.80191205IPR003340B3 DNA binding domain
PfamPF023621.5E-2591188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAYDSAAIKL RNGDSHRNMN CFSLAKDEAK FQELYSVEAV LNMIRDGTYQ AKLFAFVKGV  60
GSSGNAETQT ETGVSNDQHM GDGGVVYQLM FQKELTPSDV GKLNRLVIPK KHAVKFFPAV  120
SESGEIEDEN SGVDVQLTFM DRGHKTWTFR YCYWKSSQSF VFTRGWNRFV KEKCLKEKDV  180
VVFYRCGSGE RQEGGVTEFW MIDVQQNKGE GGSSNVEGSN LGGVVVSGSE GGEMSDKKEG  240
SEGGEISEKK DGVGEMSPVE VEREITENMS VNEGGSGSST GKMNENNGGV DLNGTKISEK  300
KGRRNRSEKM GRGRGYKRNG GEIIHNQSVI IGKEIIQLKG GSTGEEIRRE PGGEEMGERK  360
GKRVKLFGVC IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-289019213109DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249446.12e-71PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6888e-61RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLW1PQ790.0W1PQ79_AMBTC; Uncharacterized protein
STRINGERN098760.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-61RAV family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]