PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00013.53 | ||||||||
Common Name | AMTR_s00013p00103080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27357 Da PI: 8.5778 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gk ye++s evm_27.model.AmTr_v1.0_scaffold00013.53 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 101.6 | 1e-33 | 78 | 172 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 + + +++++++s+qqe+ +Lk+ e Lqr+qR+llGedL++Ls keL+qLeqqL+ slk+iRs K+++++ evm_27.model.AmTr_v1.0_scaffold00013.53 78 QETTVSTKETQSSQQEYLRLKAHFEALQRSQRNLLGEDLGPLSGKELEQLEQQLDMSLKQIRSIKTQYMI 147 455589999************************************************************* PP K-box 75 eqieelqkkekelqeenkaLrkkle 99 +q+ +lq+ke++l+e n+aL++kle evm_27.model.AmTr_v1.0_scaffold00013.53 148 DQLADLQRKEQALSESNNALKRKLE 172 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.772 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-33 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.92E-44 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 7.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-27 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.332 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKQYEFCSS 60 SSMLKTLERY QKCNYGTQET TVSTKETQSS QQEYLRLKAH FEALQRSQRN LLGEDLGPLS 120 GKELEQLEQQ LDMSLKQIRS IKTQYMIDQL ADLQRKEQAL SESNNALKRK LEAAGGWDST 180 GHQMEYNRQP AQAQADNFFH PLECDPTLQI GYPSGYPNPI TVAAPGPSVT NFMPWMAGIE 240 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-33 | 75 | 171 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00605 | ChIP-seq | Transfer from AT1G24260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF925502 | 0.0 | KF925502.1 Amborella trichopoda putative MADS-domain transcription factor AGL9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292763.1 | 0.0 | agamous-like MADS-box protein AGL9 homolog | ||||
Swissprot | Q8LLR0 | 1e-124 | MADS4_VITVI; Agamous-like MADS-box protein MADS4 | ||||
TrEMBL | W1PRJ9 | 1e-180 | W1PRJ9_AMBTC; Putative MADS-domain transcription factor AGL9 | ||||
STRING | ERN09875 | 0.0 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00013.53 |
Entrez Gene | 18438039 |