PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.233
Common NameAMTR_s00013p00252260
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 265aa    MW: 30649.3 Da    PI: 10.4073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.233genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.1e-11141182351
                                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                                +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  evm_27.model.AmTr_v1.0_scaffold00013.233 141 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 182
                                               79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-4140197IPR001471AP2/ERF domain
PfamPF008472.1E-5140183IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-7140185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-6143187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVHGECLYIE GVEMHHLILR LFIIRKRVKL DMVSLRRRRL LGLSPGKTDY VPELPKFSEI  60
PNMLKKVVEN TKSLRMQLRP VLSTDSGWQK QTNISDPGSS NVSGCSSSKE EMNKKDSAGQ  120
EIKRRKRQRR KHFEDREECI MRGVYFKNMK WQAAIKVDKK QIHLGTVGSQ EEAAHLYDRA  180
AFMCGREPNF ELSEEEKEEL RRFNWDDFLT MTRNAITNKK HQKKIANGMR RKQATNMQPC  240
NQSNGQAAQA LSAPMEEGRH VFIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12438RKRVKLDMVSLRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020525562.11e-175ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLW1PS230.0W1PS23_AMBTC; Uncharacterized protein
STRINGERN100550.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP80221215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.27e-35ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]