PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.219
Common NameAMTR_s00013p00248880, LOC18438208
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 468aa    MW: 50854.6 Da    PI: 8.962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.219genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-086790427
                                              ---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                                                C ++ rtG C++G +C+F+H+p
  evm_27.model.AmTr_v1.0_scaffold00013.219 67 IDCAYYIRTGLCRFGMTCRFNHPP 90
                                              58********************97 PP
2zf-CCCH38.71.6e-12111135327
                                               S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                               +++C+++++tGtCk+G++CkF+H++
  evm_27.model.AmTr_v1.0_scaffold00013.219 111 QPECQYYLKTGTCKFGATCKFHHPR 135
                                               799********************96 PP
3zf-CCCH36.58.1e-12157181327
                                               S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                               +++C +++rtG+Ck+G++CkF+H++
  evm_27.model.AmTr_v1.0_scaffold00013.219 157 EKECAYYLRTGQCKFGSTCKFHHPQ 181
                                               679********************97 PP
4zf-CCCH37.15.3e-12316341227
                                               -S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                               ++++C+f+++tG Ck+G+ CkF+H++
  evm_27.model.AmTr_v1.0_scaffold00013.219 316 DQPECQFYMKTGDCKFGAMCKFHHPR 341
                                               689*********************96 PP
5zf-CCCH39.78.4e-13361387127
                                               --S---SGGGGTS--TTTTT-SS-SSS CS
                                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                               ++++lC f++r+G+Ck+G++CkF H++
  evm_27.model.AmTr_v1.0_scaffold00013.219 361 PGEPLCIFYSRYGICKFGPTCKFDHPM 387
                                               589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0946391IPR000571Zinc finger, CCCH-type
SMARTSM003560.00556390IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-56790IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-56891IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356108136IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6108135IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10111135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6112137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-5114135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619154182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6154182IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5154181IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9157181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4160180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554314342IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5314341IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6317344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5320342IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352360388IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10362387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5363388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEYNATIQRS RSGFGAQQGS AMADSSQTHQ FSRPRAGESS EDAMWPLSLR SSETMESGPY  60
PERPGEIDCA YYIRTGLCRF GMTCRFNHPP NRKLAVAAAR IKGGYPERVG QPECQYYLKT  120
GTCKFGATCK FHHPRDKAGI AGRVLLNILG YPLRPNEKEC AYYLRTGQCK FGSTCKFHHP  180
QPNAMVSLRG SPVYPPVHSP TTPGQPSFHG GFPNWPMSRA SFIPSPRWQG PSSYAQLILP  240
QGMVPVPGWN TYSGQLGSAS SSDTQQPPGT GQSYGTPRQT ETGGASSPGA FPFRSSSVPM  300
GLFPLQRENV FPERPDQPEC QFYMKTGDCK FGAMCKFHHP RERLLPVPNC MLSPMGLPLR  360
PGEPLCIFYS RYGICKFGPT CKFDHPMGPF AYNLSTSSAD VPVRRLLGSS SGTPALSLSP  420
EVSGEAAVGK SRRIPLSEPR QIPSGDESIE TEGSPTASSI GPVSTFP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848460.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW1PQQ60.0W1PQQ6_AMBTC; Uncharacterized protein
STRINGERN100410.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-171zinc finger protein 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]