PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00013.209
Common NameAMTR_s00013p00245920, LOC18438198
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 570aa    MW: 61919.5 Da    PI: 6.6537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00013.209genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-09395442455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  evm_27.model.AmTr_v1.0_scaffold00013.209 395 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 442
                                               8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17389460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-11389446No hitNo description
PROSITE profilePS5088815.663391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17391459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6395442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10397447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEKDKFLING SPPSLNYRHP SSSSPDWNSA TMRMQGVPAS SSSEPLPSSF LNINWDSSID  60
QSVPFHSALS SIVSSPTSGP SVPGDSVVIR ELIGRLGSIC NNEEISPQSQ AFSSNCYSTN  120
TSCYSTPLNS PPKINLGVDH QAMGSIPIPP NSLSTPHSLA QFSTDPGFAE RAARFSCFGS  180
RNFSGIGTQF GYQDNEHPYN RALGLENGKL SRVSSNQSLR NGVSMGESKE FDGSETELKN  240
GERKMGRLVS PVVSEEVRNR NNGSFCNESD DAEISTGREE SSASDLITGV ENGAKNMSET  300
TGRKRKAIPK GKPKDQPLSQ NGKDIKNAET DESKSKRSRD GSAEKEDVKP KTEQNGGSSS  360
GDGGNKQTKE TQKPPEPPKQ DYIHVRARRG QATDSHSLAE RVRREKISER MKFLQDLVPG  420
CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNPRLD FNMEGLLSKD MLQSRGASPH  480
MVYPLDSSSV FQYGHQQNHG PLQSAMSAGS LNMQIPAIDG YADAASQFST IWDDELQSVV  540
QMGFGQNTFS TQSFHGSSTL PATHMKIEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.10.0transcription factor bHLH78
TrEMBLW1PQP60.0W1PQP6_AMBTC; Uncharacterized protein
STRINGERN100310.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-65bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]