PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00012.78 | ||||||||
Common Name | AMTR_s00012p00140500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GRAS | ||||||||
Protein Properties | Length: 115aa MW: 12762 Da PI: 9.5242 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 72.8 | 6.2e-23 | 8 | 100 | 1 | 103 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 lv+ L++cAeav+++++++a+al+++++ la ++ +++++a++f+eALa+r++r ++p++t evm_27.model.AmTr_v1.0_scaffold00012.78 8 LVHILMACAEAVQQENMSAAEALVKQIRMLAVSQTGALRKVATFFAEALARRIFR--------FHPQDTG 69 689****************************************************........7788877 PP GRAS 71 eknsseelaalkl.fsevsPilkfshltaNqaIl 103 ++ ++l++ f+ ++P lk++h+taNqaI evm_27.model.AmTr_v1.0_scaffold00012.78 70 ---GDSFSNILQMhFYMTCPHLKIAHFTANQAIR 100 ...44444444555*******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.753 | 1 | 114 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-20 | 8 | 100 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MVDSGIRLVH ILMACAEAVQ QENMSAAEAL VKQIRMLAVS QTGALRKVAT FFAEALARRI 60 FRFHPQDTGG DSFSNILQMH FYMTCPHLKI AHFTANQAIR PLQGRRECML SISV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826893.1 | 5e-49 | DELLA protein GAI1 | ||||
Swissprot | Q8S4W7 | 7e-44 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | W1PKY4 | 9e-79 | W1PKY4_AMBTC; Uncharacterized protein | ||||
STRING | ERN07790 | 1e-79 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 3e-43 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00012.78 |
Publications ? help Back to Top | |||
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