PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00012.77 | ||||||||
Common Name | AMTR_s00012p00140480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | GRAS | ||||||||
Protein Properties | Length: 208aa MW: 23207.6 Da PI: 6.6803 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 223.4 | 1.1e-68 | 1 | 194 | 123 | 320 |
GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+++ ++L ++A++l+++fe + +va++l+dle + evm_27.model.AmTr_v1.0_scaffold00012.77 1 MQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDHLQQVSWKLGQLADTLRLEFESRGFVARSLADLEAN 70 8********************************************************************* PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +L+v p E++aVn++++lh+ll+++++l++ vL v+ l+P++v++veq+a+hn+ F++rf+eal+ evm_27.model.AmTr_v1.0_scaffold00012.77 71 MLDVTPSEVVAVNSIFELHKLLAQTGALDK----VLARVRALQPQIVTIVEQDANHNRLVFVDRFAEALH 136 **********************99999999....************************************ PP GRAS 263 yysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 yys+lfdsl +lp+ s++ +++++++lgr+i ++vacega+r+erhe l +W +r++ evm_27.model.AmTr_v1.0_scaffold00012.77 137 YYSSLFDSLeRCGLPPGSRD-QVMSEVYLGRQIFDIVACEGADRVERHEPLTQWTARMG 194 *********66778887765.6777888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.7E-66 | 1 | 194 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 38.897 | 1 | 207 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MQWPALMQAL ALRPGGPPAF RLTGIGPPQP DNTDHLQQVS WKLGQLADTL RLEFESRGFV 60 ARSLADLEAN MLDVTPSEVV AVNSIFELHK LLAQTGALDK VLARVRALQP QIVTIVEQDA 120 NHNRLVFVDR FAEALHYYSS LFDSLERCGL PPGSRDQVMS EVYLGRQIFD IVACEGADRV 180 ERHEPLTQWT ARMGSRVRAR APRLERV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-26 | 1 | 179 | 141 | 311 | Protein SCARECROW |
5b3h_A | 6e-26 | 1 | 179 | 140 | 310 | Protein SCARECROW |
5b3h_D | 6e-26 | 1 | 179 | 140 | 310 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006826893.1 | 1e-113 | DELLA protein GAI1 | ||||
Swissprot | Q84TQ7 | 4e-98 | GAI_GOSHI; DELLA protein GAI | ||||
TrEMBL | W1PJ75 | 1e-150 | W1PJ75_AMBTC; Uncharacterized protein | ||||
STRING | ERN07789 | 1e-150 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1251 | 15 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-91 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00012.77 |
Publications ? help Back to Top | |||
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