PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00012.146
Common NameAMTR_s00012p00208260
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 615aa    MW: 67741.4 Da    PI: 9.4295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.146genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1660106148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               +g WT++Ede+l +av+ + g++Wk+Ia++++ +R++ qc +rwqk+l
  evm_27.model.AmTr_v1.0_scaffold00012.146  60 KGGWTPQEDEILRNAVNYFKGKSWKKIAAYFP-HRSEVQCLHRWQKVL 106
                                               688*****************************.************986 PP
2Myb_DNA-binding59.38.5e-19112158148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               +g+WT+eEd+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  evm_27.model.AmTr_v1.0_scaffold00012.146 112 KGPWTKEEDDMIIKLVEKYGAKKWSVIAQSLP-GRIGKQCRERWHNHL 158
                                               79******************************.*************97 PP
3Myb_DNA-binding59.95.5e-19164209148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               +++WT eE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++yl
  evm_27.model.AmTr_v1.0_scaffold00012.146 164 KDAWTVEEELALIRAHQSYGNR-WAEIAKFLP-GRTDNSIKNHWNSYL 209
                                               679*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.10555106IPR017930Myb domain
SMARTSM007171.1E-1359108IPR001005SANT/Myb domain
PfamPF002491.1E-1460106IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-1561116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-2162114IPR009057Homeodomain-like
CDDcd001673.45E-1263106No hitNo description
PROSITE profilePS5129431.756107162IPR017930Myb domain
SuperFamilySSF466896.6E-33109205IPR009057Homeodomain-like
SMARTSM007171.9E-18111160IPR001005SANT/Myb domain
PfamPF002494.8E-18112158IPR001005SANT/Myb domain
CDDcd001677.71E-17114158No hitNo description
Gene3DG3DSA:1.10.10.604.7E-27115162IPR009057Homeodomain-like
PROSITE profilePS5129424.742163213IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-24163213IPR009057Homeodomain-like
SMARTSM007172.0E-19163211IPR001005SANT/Myb domain
PfamPF002491.1E-17164209IPR001005SANT/Myb domain
CDDcd001672.47E-15166209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MVAVKTEHDC VENKQPAATS SSSVSDGNCS CVQKPSCRCS PTSSSPSHWR RASGPIRRAK  60
GGWTPQEDEI LRNAVNYFKG KSWKKIAAYF PHRSEVQCLH RWQKVLNPEL VKGPWTKEED  120
DMIIKLVEKY GAKKWSVIAQ SLPGRIGKQC RERWHNHLNP EIKKDAWTVE EELALIRAHQ  180
SYGNRWAEIA KFLPGRTDNS IKNHWNSYLK KKLDVYLATG QLPQCQKTIA QNGDKVSSRP  240
VNGKSSASCS QQLDLKPDIK PSMQMCSNAS VISGTTQRAS QTVDLQIEGE QKEQLGCSRT  300
PISAANSMGK VPLDATPRSD FIRLNSQTRN GCKKSNSSIM SKSFGNSETG TFEKVSTPLL  360
PSDNPNLGPL YYEPPRLTDF DIPIISEILN TDSCIQHLYS PRNINSPTIS RTPSHLKRAA  420
ISDSSPESIL RSAAKSFTNT PSILRKRSRG ASSSPVRLNG TRGSTNCIET PSGSCTPEAK  480
IASECSDQRL GSGPGETTPE DCDGGYNAFS GTSLFTSSPY YLKPKRKSNA RSVEKQLEFP  540
LEEGHHTGGM RFSFLSINPE SHDPVSDPNK RSFDTLEKTA AGFEVLTKDC KPATKMNVNL  600
GMEQVSKLGL KCQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69592135159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69592135159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524144.10.0transcription factor MYB3R-3
RefseqXP_020524145.10.0transcription factor MYB3R-3
TrEMBLW1PIN30.0W1PIN3_AMBTC; Uncharacterized protein
STRINGERN078580.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-115myb domain protein 3r-5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]