PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.370
Common NameAMTR_s00010p00252990
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 453aa    MW: 51177.3 Da    PI: 5.8646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.370genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-132064348
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               WT++Ed+ll + ++  G+++W++Ia+++   +t  qc+ rw++yl
  evm_27.model.AmTr_v1.0_scaffold00010.370 20 TWTPQEDDLLREQIRINGTESWTAIASKFK-DKTSRQCRRRWYTYL 64
                                              6****************************9.*************97 PP
2Myb_DNA-binding45.22.2e-1470113146
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               +g W++eEd+ll +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
  evm_27.model.AmTr_v1.0_scaffold00010.370  70 KGGWSAEEDKLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFTT 113
                                               688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3181364IPR017930Myb domain
SMARTSM007179.4E-131766IPR001005SANT/Myb domain
CDDcd001675.25E-122064No hitNo description
Gene3DG3DSA:1.10.10.601.8E-192171IPR009057Homeodomain-like
PfamPF139211.5E-142181No hitNo description
SuperFamilySSF466892.02E-2544125IPR009057Homeodomain-like
PROSITE profilePS5129420.78665119IPR017930Myb domain
SMARTSM007173.5E-1569117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2072118IPR009057Homeodomain-like
CDDcd001676.48E-1173114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEAMKKLHEV PKQRDRHIVT WTPQEDDLLR EQIRINGTES WTAIASKFKD KTSRQCRRRW  60
YTYLNSDFKK GGWSAEEDKL LCEAQKIFGN RWTEIAKVVS GRTDNAVKNR FTTLCKKKAK  120
REAQSKENTS NCLNENNKRI ILPNDTSPFK RIRTHISGFE EIRTRSVMDI VKTNIHDVNT  180
RKKGRSRGDL GSISQQVRSP LAALVPNYNS IVDLSTECLN NDESKLATKD GSGDKKVQET  240
FLAKNDPRIT ALLQQAELLS SLALKVNTQG SNQSFENAWK ELQEFLAQSG DSDILRHKVA  300
GLDPLFEDFK NLITDLKSSQ TGSPFPLRQS ELYEDLSANS GDSAISNPQS NAEITKIDQR  360
QTEECVAFNK EENTDDCIGE KNEEEIQGIE DGYSTEGLLS SCIQPNEDGK FSCFSVNVEF  420
SSPLRMIPFF RSFADGIPSP QFSDSFILLF DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-282111910108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623133.20.0transcription factor MYB124
RefseqXP_020520666.10.0transcription factor MYB124
TrEMBLW1NGQ70.0W1NGQ7_AMBTC; Uncharacterized protein
STRINGERM943940.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54161421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.11e-102myb domain protein 88
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]