PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.224
Common NameAMTR_s00009p00242790, LOC18423009
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 656aa    MW: 73969.2 Da    PI: 5.4769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.224genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.87e-074825211155
                                               HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH  11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                               rRR+++N++f  Lr l P+ +      K +Ka+ L  ++eY+k+L+
  evm_27.model.AmTr_v1.0_scaffold00009.224 482 RRREKLNEKFLALRLLDPSiS------KIDKASLLGDTIEYLKELE 521
                                               89**************99955......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5516199IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088812.297471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-11475537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11476532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-9476525No hitNo description
SMARTSM003536.2E-9478526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MASGLQNQRG VQVNLLRRRL GSAVQGLQWS YGIFWTLSSQ HQGVLEWGDG YYNGDIKTRK  60
TVQPMELTPE EMGLQRSLQL RELYASLSMG ESSQQARRPC AALSPEDLTD TEWFYLVCMS  120
FTFNPGQGLP GRTLSRGQHI WLCNAHNADS KFFSRSLLAK SASIQTVVCF PVPNGVLEMG  180
VTELVTEEPT SIQRMMTFFL DLTKPACSEQ SHSSPQNSDH DYDDLDFAKI GHENPGKDTC  240
ESETQHFNYY QDDTHNAFSF DISYLPEEGV EFEKEGIKEL NGVCEDFKTR SPDFSEHGSS  300
QQLDDLYMPD GITNTCQVQS CPFIEEENGA DGSPNNSDCI SQTFVEASPK GEILKPFMQD  360
AQDSWDGTPL NYGVNGADNS HYSRTLSSIL QRGENFKFTE APRRLSIKSC SSKSSFLLWK  420
KGSELPRRQI EMPQKMLKKV LFIVGRFRSE NSPMTQECDV GKFGVWKKDV EDLNHSHVLS  480
ERRREKLNEK FLALRLLDPS ISKIDKASLL GDTIEYLKEL ERRVKELEAR GTRKQADISE  540
RTSDNYAITE KYSGNKRKAS VLDPAQLDSS RVPLDGIEVT ILERDISVEM CCPWRESLLL  600
EIVQGLSKLQ LDAHSIKSST NNDMLTLSLK AKLRRKVQTT AGELKQTLTR IVGWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-18161999192Transcription factor MYC3
4rqw_B1e-18161999192Transcription factor MYC3
4rs9_A1e-18161999192Transcription factor MYC3
4yz6_A1e-18161999192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827621.10.0transcription factor EGL1 isoform X1
RefseqXP_020525444.10.0transcription factor EGL1 isoform X1
TrEMBLW1NGV10.0W1NGV1_AMBTC; Uncharacterized protein
STRINGERM950370.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-111bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]