PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.61
Common NameAMTR_s00007p00102750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family C3H
Protein Properties Length: 696aa    MW: 73984.8 Da    PI: 6.2828
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.61genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08263283526
                                              --SGGGGTS--TTTTT-SS-SS CS
                                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                              +C++f++ G C++Gd C +aHg
  evm_27.model.AmTr_v1.0_scaffold00007.61 263 PCPDFRK-GACRRGDACEYAHG 283
                                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.3E-1427161IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-1272160IPR020683Ankyrin repeat-containing domain
SMARTSM002482.674103IPR002110Ankyrin repeat
PfamPF127961.7E-874145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.47774147IPR020683Ankyrin repeat-containing domain
CDDcd002041.27E-676155No hitNo description
SMARTSM002480.13112144IPR002110Ankyrin repeat
PROSITE profilePS5008810.366112147IPR002110Ankyrin repeat
SMARTSM003564.9E-6258284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4263285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695263285IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6263283IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944293317IPR000571Zinc finger, CCCH-type
SMARTSM0035631293316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MDPYHKTSVD HDSTFLFKDI EVGSKGNGYS SLLELSASND LISFKQAVEE DGSAIDGTAL  60
WYGRRSGSSR MSVEQRTPLM VAALFGSTDV LSYILSAYET CGIDVNQASG SDGATALHLA  120
AASGASLAPE AVRLLVAASA DPTRPDALGN LAADLVPTAP HLTPSRPLLE GLLGRKAETE  180
DLGSVPPPEQ GLKSSEKKEY PVDLSLPDIK NGVFGTDEFR MYSFKVKPCS RAYSHDWTEC  240
PFVHPGENAR RRDPRRYHYS CVPCPDFRKG ACRRGDACEY AHGVFECWLH PAQYRTRLCK  300
DETGCTRRVC FFAHKPEELR PLYASTGSGV PSPRSNSPSS SLEPPMSPLA LGSPSVLMLP  360
SFATSTSAMS PSSLQLSGAG LQGSRLKATR SARDYVTDDQ QLLDELSSNF AAQSRLNPLN  420
ISRSAKLRSL AAGVSPTNLD EMLSTEAALA QLDAAMLTQL QSPTSLQARQ ALLGHSSTGS  480
SSSISPAMAQ AMLNQSTSSF SPAMAQAMLN QSGSSLAPAM AQAMLNQSGS SLSPAMAQAM  540
LNQSGSSLSP AMAQAMLNSS RSAAFAKRSQ SFCDRGQGVL GTMATSPPPT SAFADWGSPN  600
GKLDWGVQGE ELSKLRKSAS FGFRSNGVVH GGDDPDVSWV QSLVKDGPAS SRLGGGAAVT  660
EDSRFGGQFV RHHQELQSAE SWFEQIYMEQ EQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843575.20.0zinc finger CCCH domain-containing protein 66
TrEMBLW1PDX70.0W1PDX7_AMBTC; Uncharacterized protein
STRINGERN052500.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-152C3H family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]