PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.335
Common NameAMTR_s00007p00262250
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 571aa    MW: 64781.2 Da    PI: 4.5521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.335genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2231.5e-681995671373
                                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset 69 
                                               l +lL+++Aea+s++++  a+ lL+rl++l+s +g+p++R+a+y+  +L+   ++  +el++    +++
  evm_27.model.AmTr_v1.0_scaffold00007.335 199 LLHLLVAAAEAISNESNDVADVLLQRLRKLVSCSGTPITRVAFYLFHGLQWLFTG-KNELSD---LKSD 263
                                               579*************************************************999.555554...3333 PP

                                      GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp. 136
                                               ++ n++++l a++++ e+ P+ +++h+taNq Il++++++ +++H+iDfdi+ GlQWp+L++aLas p 
  evm_27.model.AmTr_v1.0_scaffold00007.335 264 DRFNEENHLLAYRALIELHPCSRMAHFTANQFILDSISSDtRKLHVIDFDIMDGLQWPPLMEALASEPr 332
                                               4445999*******************************997889*********************9887 PP

                                      GRAS 137 .egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkp.. 198
                                                ++  s++iT+++     ++ +   tg+ L++fA+ lg +f+f+ +    + ++ +++  ee    +  
  evm_27.model.AmTr_v1.0_scaffold00007.335 333 cSKFKSIKITAIKW----KESSGLLTGKWLKEFAQDLGFRFSFEEMelqnLINHHQKIYREEVMSPSee 397
                                               68889*********....8899999*******************9965553333344433433222245 PP

                                      GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealey 263
                                                +E  +Vn++++l ++ d+s+   s   +++++ k+l+P+++v+ + + ++ +e   +F+ rf+++l++
  evm_27.model.AmTr_v1.0_scaffold00007.335 398 eEEIQIVNCMFKLLHMCDRSMWPLS---NLIEASKKLKPRLLVLGHCNGELRKEisgDFVSRFSDCLQW 463
                                               59999************87776555...8****************9998885544459*********** PP

                                      GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                                sa+ dsle  lp++   r  vEr +lg++ +  v+  ++      + ++k +   e+ GF++++lse+
  evm_27.model.AmTr_v1.0_scaffold00007.335 464 ASAICDSLEWILPTQRGGRELVERSFLGPKFCREVMFGERG-----KLAAKFN---ETNGFRAAKLSER 524
                                               *********************************99998877.....3333333...579********** PP

                                      GRAS 333 aakqaklllrkvksdgyrve..eesgslvlgWkdrpLvsvSaW 373
                                               +++qa+ +lr  +s+ + ve  e +++l l+W + +L+svSaW
  evm_27.model.AmTr_v1.0_scaffold00007.335 525 NVNQANEILRLRASHSFGVEvaEGDNELALTWGSTTLLSVSAW 567
                                               **********99966555554499******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.792173546IPR005202Transcription factor GRAS
PfamPF035145.2E-66199567IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MEWSALPHRL SPFPPNFPVI EMVESSFFSG KFSPDSSDIV GIPLFDELFL NSLAPNSVKN  60
VEIPQFDNLF NNSLVSDSGA VEEISQFDEL LYDFPVPDST EFREIEEMDF DLVVPKPEGS  120
LSYETKILQL HSRIMNSPSD LQEREYVLQK NMEISQNQEA VSLHDSPDLS GRDSDSGGEI  180
SPENDDSSNH EDEEKGFLLL HLLVAAAEAI SNESNDVADV LLQRLRKLVS CSGTPITRVA  240
FYLFHGLQWL FTGKNELSDL KSDDRFNEEN HLLAYRALIE LHPCSRMAHF TANQFILDSI  300
SSDTRKLHVI DFDIMDGLQW PPLMEALASE PRCSKFKSIK ITAIKWKESS GLLTGKWLKE  360
FAQDLGFRFS FEEMELQNLI NHHQKIYREE VMSPSEEEEE IQIVNCMFKL LHMCDRSMWP  420
LSNLIEASKK LKPRLLVLGH CNGELRKEIS GDFVSRFSDC LQWASAICDS LEWILPTQRG  480
GRELVERSFL GPKFCREVMF GERGKLAAKF NETNGFRAAK LSERNVNQAN EILRLRASHS  540
FGVEVAEGDN ELALTWGSTT LLSVSAWYVS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-271995674374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843849.20.0nodulation-signaling pathway 2 protein
TrEMBLW1PCT60.0W1PCT6_AMBTC; Uncharacterized protein
STRINGERN055240.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-32GRAS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]