PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.332
Common NameAMTR_s00007p00262050, LOC18433702
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family GRAS
Protein Properties Length: 543aa    MW: 61905.4 Da    PI: 4.4083
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.332genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.61.5e-601555391373
                                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppset 69 
                                               +++lL+++Aea+s++++ la+ lL+rl++++s +g+++ R+a y+  +L+  l++  + l   l  +++
  evm_27.model.AmTr_v1.0_scaffold00007.332 155 MIHLLVAAAEAISNESHDLAEVLLQRLKKHVSRSGTTIARVAYYMYHGLQWLLSG-HNAL---LDLKSN 219
                                               589***************************************************9.2222...344444 PP

                                      GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLa..sR 135
                                                + ++++ l+a++++ e+ P+ +++h+taNq Ile+v ++ + +H+iDfdi+ GlQWp+L++aL   +R
  evm_27.model.AmTr_v1.0_scaffold00007.332 220 YRIREDNYLSAYRALIEIHPCSRLAHFTANQFILESVTSNcRNLHVIDFDIMDGLQWPPLMEALVsdAR 288
                                               44458999****************************9988799*********************95567 PP

                                      GRAS 136 pegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl....eleeLrvkp.. 198
                                                ++  s+++T+++       e+  +t++rL+ fA+ lg++f+ + +  ++l++     e e+++ ++  
  evm_27.model.AmTr_v1.0_scaffold00007.332 289 YSQLKSIKVTAIKW-----GETSATTARRLHAFARDLGLSFSLEEIELENLTTYqnshEKESIDSDEed 352
                                               79999********9.....889999********************955555444333344455333334 PP

                                      GRAS 199 .................gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.. 248
                                                                + +++Vn++++l ++++++ s +   +++++  k+l+P+++v+ +   ++  
  evm_27.model.AmTr_v1.0_scaffold00007.332 353 gleeeeeeeeeegdvgeESVVIVNCMFRLLHMPERH-SWQ--LSKLIEGSKELRPELLVLGHCSNNMhg 418
                                               4444446666777776355789**********9443.333..369**************9987755522 PP

                                      GRAS 249 .nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                                 se+F+ rf+ +l+  sa+ dsle +lp+++  r ++Er +lg++ +  v+   ++   ++       
  evm_27.model.AmTr_v1.0_scaffold00007.332 419 qISEDFVSRFSWCLQGASAICDSLEWSLPTQKLGREMIERLFLGPRFCREVMFVDRA---KCV-----A 479
                                               3467********************************************999998887...222.....3 PP

                                      GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdg..yrve.eesgslvlgWkdrpLvsvSaW 373
                                               +  e++G+++ ++se++  qa+ +lr ++ dg  yr   e+ ++lvl W +  L+svS+W
  evm_27.model.AmTr_v1.0_scaffold00007.332 480 RLPETFGYEEGTISERNIRQADEILRLHARDGhfYRQGaERPNELVLRWGSTGLLSVSSW 539
                                               445789***********************9996544436899****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.277129517IPR005202Transcription factor GRAS
PfamPF035145.3E-58155539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEWFDMFHDV DLPQMQTTAF FSDQISVDSG AVAGIQDLDE LFLDFPVSAT PSESMDFMDM  60
ELDMLRSDEA LNRIQECLSQ SDSELPHQQQ LFHDHDSLLD EVIESADLDR GHSETSQKLQ  120
EAAVMESSPV LCESSVLHEN TESRSCEEEE KGMLMIHLLV AAAEAISNES HDLAEVLLQR  180
LKKHVSRSGT TIARVAYYMY HGLQWLLSGH NALLDLKSNY RIREDNYLSA YRALIEIHPC  240
SRLAHFTANQ FILESVTSNC RNLHVIDFDI MDGLQWPPLM EALVSDARYS QLKSIKVTAI  300
KWGETSATTA RRLHAFARDL GLSFSLEEIE LENLTTYQNS HEKESIDSDE EDGLEEEEEE  360
EEEEGDVGEE SVVIVNCMFR LLHMPERHSW QLSKLIEGSK ELRPELLVLG HCSNNMHGQI  420
SEDFVSRFSW CLQGASAICD SLEWSLPTQK LGREMIERLF LGPRFCREVM FVDRAKCVAR  480
LPETFGYEEG TISERNIRQA DEILRLHARD GHFYRQGAER PNELVLRWGS TGLLSVSSWH  540
VP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2017354021375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843846.10.0nodulation-signaling pathway 2 protein
TrEMBLW1PD160.0W1PD16_AMBTC; Uncharacterized protein
STRINGERN055210.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-34GRAS family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]